Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4490 ATGGGAGCCAAAGGTCCTTCCCTTTTCTTTCTTTTATCTCTGGCTACCCTTTTGGCTGTTGTCACTGCAGGAACCACTGCATCACCAAATGTGCATCCAAGTCACTATGCTTCAACATTCAATAGGACCCTTTTTCCAAAAGATTTTCTATTTGGAATTGGTTCTTCTGCTTACCAGGTAGAAGGAGCTTCAAATATAGATGGGAGAGGACCAAGTATATGGGACACTTTCACTAAAAAACATCCAGATAAGATTTGGGACCATAGCAGTGGTAATATTGGATCAGATTTTTACCATCGATACAAGAGTGATATAAAGGTGGTAAAACAAATTGGGTTGGACTCGTACAGATTCTCTATCTCATGGTCAAGAATATTCCCAAAGGGCAAAGGTGCAGTCAATCCCTTGGGAGTTAAGTTCTATAACAATCTCATTGATGAGATCCTAGCAAATGGCTTAATACCCTTTGTAACTCTGTTTCATTGGGATCTTCCACAAAGTCTTGAAGATGAATATATGGGATTTCTAAGCCATAAAGTAGTGAAGGATTTTGAAGATTATGCTGAGTTTTGCTTCAAGACATTTGGAGATAGGGTTAAAAATTGGGCAACACTTAATGAACCTTTTTCATTCACCATAAATGGATACATGGGTGGCACATTTGCACCTGGTAGATGTTCTAAATGGGTAGGAAATTGTGAAGCTGGTGATTCAATAAGAGAGACTTACATTGTTGCTCATAACTTGATACTTGCTCATGCTGCTGCAGTTAGAGTCTACAAGAGAAAATATCAGGCTCATCAAAAAGGACAAATTGGAGTGACCTTAGTGACTCACTTCTTTGAACCATATTCCAATAGTGATGCTGATCGCAAAGCTGCAAGTCGAGCTCTTGACTTCTTCTTTGGATGGTTTGCTCATCCAATTACATATGGTTACTATCCCGAAATTATGGTATCATTATTAGGTAATAGACTCCCCAAATTCACAAAAGAAGAATCTGAAATTATCAAAGGTTCCTATGATTTTCTTGGTGTAAATTATTACTCCACATATTATGCACAAAGCAGACCACCAACAAATACCAACCAGAACTATTACACTGATATGCAAGCAGAAGTCAGTCCATTGAGGAATGGTGTATCTATTGGTCCTTCGACCGATTTGAACTGGCTCTATGTCTATCCGAAGGGAATTCATGGTCTTGTGACACACATAAGGGATGTATACAAGAATCCACCAGTGTACATTACTGAAAATGGTATTGCACAAAATAGGAATGACTCAATTCCAGTCAATGTAGCTCGTAAAGATGGTGTAAGGATTAGATATCATGATGGCCATCTCAAATACATCCTTCAAGGAATAAAAGATGGTGCAAATGTAAAAGGCTACTATGCTTGGTCATTTTCTGACAGTTATGAATGGGATGCAGGCTACACAGTACGATTTGGAATCATTTATGTGGATTTCAAAAACAATTTGAAAAGATATCCCAAGTACTCTGCTTTTTGGCTTCAAAAGTTCCTTCTTAAGGGATAA 1542 0.3813 MGAKGPSLFFLLSLATLLAVVTAGTTASPNVHPSHYASTFNRTLFPKDFLFGIGSSAYQVEGASNIDGRGPSIWDTFTKKHPDKIWDHSSGNIGSDFYHRYKSDIKVVKQIGLDSYRFSISWSRIFPKGKGAVNPLGVKFYNNLIDEILANGLIPFVTLFHWDLPQSLEDEYMGFLSHKVVKDFEDYAEFCFKTFGDRVKNWATLNEPFSFTINGYMGGTFAPGRCSKWVGNCEAGDSIRETYIVAHNLILAHAAAVRVYKRKYQAHQKGQIGVTLVTHFFEPYSNSDADRKAASRALDFFFGWFAHPITYGYYPEIMVSLLGNRLPKFTKEESEIIKGSYDFLGVNYYSTYYAQSRPPTNTNQNYYTDMQAEVSPLRNGVSIGPSTDLNWLYVYPKGIHGLVTHIRDVYKNPPVYITENGIAQNRNDSIPVNVARKDGVRIRYHDGHLKYILQGIKDGANVKGYYAWSFSDSYEWDAGYTVRFGIIYVDFKNNLKRYPKYSAFWLQKFLLKG* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4490 513 ProSitePatterns Glycosyl hydrolases family 1 active site. 415 423 IPR018120 -
Tpr3g4490 513 PANTHER BETA-GLUCOSIDASE 17 16 511 - -
Tpr3g4490 513 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Tpr3g4490 513 PANTHER GLYCOSYL HYDROLASE 16 511 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 Pfam Glycosyl hydrolase family 1 43 509 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 PRINTS Glycosyl hydrolase family 1 signature 415 423 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 PRINTS Glycosyl hydrolase family 1 signature 438 449 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 PRINTS Glycosyl hydrolase family 1 signature 459 476 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 PRINTS Glycosyl hydrolase family 1 signature 483 495 IPR001360 GO:0004553|GO:0005975
Tpr3g4490 513 SUPERFAMILY (Trans)glycosidases 35 510 IPR017853 -
Tpr3g4490 513 Gene3D Glycosidases 25 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4490 Tpr-Chr3 50031802 50038214 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4490 27 510 Glycoside Hydrolase AT5G44640 51.837 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4490 K22279 - gmx:100783037 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4490 3 50031802 50038214 Tpr3g4490 3 50031802 50038214 ECH
Tpr3g4490 3 50031802 50038214 Tpr7g1461 7 16191267 16199038 PCT