Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4478 ATGGCTGCAAAACTTCTGCATTCTTTAGCAGATGATAATCAAGATCTGCAGAAGCAGATTGGATGTATGACAGGAATATTTCAACTGTTTGATCGTCATCAGATGCTCACAGCTCGTCGGATTAGTCAGAAGAGGCTTCCTTCTGGTAATTTGCACTTCAATGATGGCAGCTTCGAAAGAGATTCTGATAGCGTACAACATCAACAACAAATGGCAACTGAATCAAGCTTAAATAGAGGACTGAATGAAAAGCAAAGAATTTCGACAGAATCATCAAGAGCATCATTCTCTTCTTGTTCATCATCGGTGTCCTCTTTGGACTTTAAGCCTGAAGTAGAGACTTCGTTTGAAACTCCTACAAGGGACACATTTATGAACCAACCCGCTATCTCTCCCCGTTTTGGACGTCACTCTCTTGACCTGCGCGATGTGGTGAAGGATTCTATGTATAGGGATCCTCGAGGGCCGTCTGCAAAATCTACAGCCAAAGATCAATCTTCCATTCATGGTGTGAAGCACAGGGATTCTCCGCGACCTCTTCAGATGTCGAAATATGTTGATAGATCTTACGGAGTTGAAATAGACGAAAAGCAAAGTGTGCCTATTGATCTAAAGGAGTCGATCCGAGTCCTTTCTAAACTTCGAGAAGCCCCTTGGCATTATGCAGAAAGTACTAGAGAACTTCCGAGATCGTCACATGAAGTAAGAGATCAACACTGGAATTCAGTCTCGAAGGATGCTCCTTGGTTAGCTTATGATGGAAGAGAAACAAGTCGTTTATCTTTTGAATCGCGAGAGACAATCAAATCCACACCAAAGCTAAAAGAGTTTCCTAGGCATTCACTGGATAGTAAGGATGGTTCGTGGCGCACTTATAACTCCGATTCAAAGCCTAGCAGCATCTCAAGAAACGTTTATGGTGCCACCTCTACCTCCAATGAAAAACTCTCTAGTTTACAACAGTCTTCATCAACACAGAATCGGCTACCGAGTGTTGTTGCAAAGCTAATGGGCTTGGAAGCATTAGATTCCTCTTCGGCCGGTGATACTCAATCAGGTTCAACTGAAACTTACTCTGTTCAAGATAACAGCCAGTTTCCTAGACCATCGAAAAATGGATTCATTAGACCTCTTCGAGTGTCTAACTCTCCGAAAATCTCATTGAAAGATCCAACTTCCCCTAGGCGGAAGAATCCGGAGGTGGTTATGAAACCGGTCTCCAGTTCAAAGTTTCCTATTGAACCAGCACCATGGAAGCAACATGATGCAAATAGAAACTCTCAGAAACAAATTTTAAGGACAACAAAAGTTCCATTAAGAACACAAGATTCATTTCCTTCGGTTTATAGTGAGATAGAGAAGCGATTGAAGGACCTTGAATTCAAACAATCCGGAAGGGATCTTAGAGCACTAAAGCAGATACTAGAAGCAATGCAAGAAAAGGGACTGTTAGAGAGCCGTAAAGAAGAACAAGTTCCAAACGTAGTTGGAAGTCGAAGTGACTATGAACCTAAAGCTACCAATCTAAATCAGAATTCAAGATTGGTAAAGCAACAAAATCCTCAGAGAAACAATTTTCTGTCTTCTACAATCAAAGGAAATGATTCCGCAAGAGCCTTTGATTCTCCAATAGTGATAATGAAACCGGCAAAACTTGTGGAGAAATCTGAGATTTCTGCTTCTTCGGCTATTCCAATTGGTGGCTTTTCTGGTTCCAATAATAGAAACAACATAGCAAAAGAACAGTATCCAAAGAATATTCGGAGGGACGCTTCTCCAAGTTCCACCGATAAGAAAACAAGTATTACAAAGACTACTAGGTCTTTACAATCTCAATCAAGGTCAAACCAATTTCCAAAAGAAAGCCAAAGTTCAGTGAAGAGTTCAGGATCAGTGAGTCCAAGATTGCAACAGAAGAAGTTGGAGTTAGAGAAGCGATCTCGTCTGCCTACATCGCCATCAGATTCAAACAAACCAAGAAGGCAATCCGGTAAAAAGGCAGCCGAATCAGTTTCTCCAAGTGGAAAAGTACGACACAAAACTGTCAACTCACAGCACAGCGAAGAGCAACTGAGTGAGATAAGCAATGATTCTAGAAGTTTTTACCAAGGGGATGAAACTTCTATTCAATCTGACAGCATCACCGTTGACTCGAAAATGGATATTGAAGTCACTAGTAGTTTACGGTCTTCTGAAATTGATGACAGCCAAAGTCCATCCTTGAAGGCTATGAAGAAATTGGTTTCAGAAACAGTTCAGAAAAAATCCACACCAAGGTTGGATCAGGATGAAACAATCGCAGAACTTGCATCTATGGGGCCGGAACATCCAAGTCCTAACTCCGTTCTTGATGGATCGGTATACAAAGATGACCTGCTGTCGCCAGTAATGCAGACACCTGAAGATTCAAAAGCTGGTAATGCTGAAGAATCGAAAGATAATGAGGTCAAAGATCAATGGAAGCCTGATGACAACCTTTCGTTTAACAGCACGGGATCTGGAGAGATCAATCGCAAGAAATTACAAAGCATAGATCATCTTGTTCAGAAGCTTAGACGACTGAACTCCAATCACGATGAAGCTAGAAACGATTACATTGCTTCCTTATGCGAAAACTCAAATCCAGACCACAGATACATATCTGAAATACTACTAGCCTCGGGTCTCTTACTCAGAGACCTGAATTCTGAATTTTTGACATTTCAACTGCACTCGTCGGGTCATCCTATTAACCCGGAGTTATTCCTTGTCTTGGAGCAGACCAAGGCAAGTAGTTTGCTTTCGAAAGAAGAAAGCAGCTTTGATGGAAAAGCTACTTTCTCGAAGCAAACTACAGAGAAATTTCACCGAAAACTCATCTTTGATGCCGTGAACGAAATTCTTGTTGCAAAACTAGGTTACTCTCCTGAGCCATGGTTTCAGCCAATCAAACTCACAAAGAAAAACCTCAGTTCTCAAAAGCTTCTTAAAGAACTATGCTTCGAGATAGAAAAAGTTCAAGCCAAGAAAACTGAATGCAGCTTAGAAGACGACGAAGAAGATGATAGTCTAAAAAGCATGTTGTGTGAAGATGTGATACATGGTTCAGTATGTTGGGAAGATTTCAATGGTGAAATACCTGGAATTGTGTTGGATGTTGAGAGATTGATATTTAAGGATTTGGTAAATGATATTGTCATCGGTGAAGCATCTGGCTTGCGAGTCAAGTCATCGGTTCGGCGCAGGAAACTATTTGGAAAGTAG 3243 0.4123 MAAKLLHSLADDNQDLQKQIGCMTGIFQLFDRHQMLTARRISQKRLPSGNLHFNDGSFERDSDSVQHQQQMATESSLNRGLNEKQRISTESSRASFSSCSSSVSSLDFKPEVETSFETPTRDTFMNQPAISPRFGRHSLDLRDVVKDSMYRDPRGPSAKSTAKDQSSIHGVKHRDSPRPLQMSKYVDRSYGVEIDEKQSVPIDLKESIRVLSKLREAPWHYAESTRELPRSSHEVRDQHWNSVSKDAPWLAYDGRETSRLSFESRETIKSTPKLKEFPRHSLDSKDGSWRTYNSDSKPSSISRNVYGATSTSNEKLSSLQQSSSTQNRLPSVVAKLMGLEALDSSSAGDTQSGSTETYSVQDNSQFPRPSKNGFIRPLRVSNSPKISLKDPTSPRRKNPEVVMKPVSSSKFPIEPAPWKQHDANRNSQKQILRTTKVPLRTQDSFPSVYSEIEKRLKDLEFKQSGRDLRALKQILEAMQEKGLLESRKEEQVPNVVGSRSDYEPKATNLNQNSRLVKQQNPQRNNFLSSTIKGNDSARAFDSPIVIMKPAKLVEKSEISASSAIPIGGFSGSNNRNNIAKEQYPKNIRRDASPSSTDKKTSITKTTRSLQSQSRSNQFPKESQSSVKSSGSVSPRLQQKKLELEKRSRLPTSPSDSNKPRRQSGKKAAESVSPSGKVRHKTVNSQHSEEQLSEISNDSRSFYQGDETSIQSDSITVDSKMDIEVTSSLRSSEIDDSQSPSLKAMKKLVSETVQKKSTPRLDQDETIAELASMGPEHPSPNSVLDGSVYKDDLLSPVMQTPEDSKAGNAEESKDNEVKDQWKPDDNLSFNSTGSGEINRKKLQSIDHLVQKLRRLNSNHDEARNDYIASLCENSNPDHRYISEILLASGLLLRDLNSEFLTFQLHSSGHPINPELFLVLEQTKASSLLSKEESSFDGKATFSKQTTEKFHRKLIFDAVNEILVAKLGYSPEPWFQPIKLTKKNLSSQKLLKELCFEIEKVQAKKTECSLEDDEEDDSLKSMLCEDVIHGSVCWEDFNGEIPGIVLDVERLIFKDLVNDIVIGEASGLRVKSSVRRRKLFGK* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 271 286 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 59 94 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 687 718 - -
Tpr3g4478 1080 Pfam Domain of unknown function (DUF4378) 876 1057 IPR025486 -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 166 181 - -
Tpr3g4478 1080 PANTHER LONGIFOLIA PROTEIN 1 1078 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 271 327 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 148 184 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 63 94 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 805 822 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 343 408 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 596 636 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 575 718 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 486 530 - -
Tpr3g4478 1080 Coils Coil 844 864 - -
Tpr3g4478 1080 PANTHER LONGIFOLIA PROTEIN 1 1078 IPR033334 GO:0051513
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 501 530 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 221 240 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 798 834 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 344 370 - -
Tpr3g4478 1080 MobiDBLite consensus disorder prediction 287 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4478 Tpr-Chr3 49874809 49880632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4478 134 1079 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 45.178 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4478 - - gmx:100787391 1509.2