Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4476 ATGATGTCAAGTTCAAGAGATGGTAATTATCAAGAAAAACAAGGAGATGAAAATAATATGACAAATATTGAAAAAATTTCCAAGACACCTTCAAGTACTTCAAGACAATGGTCAACATCAAGTTTAAGAAATCCAAGAATTGTGAGAGTATCAAGAACATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGCACAATAAGAGGATTAAGAGATAGAAGGATTAGGCTTTCAGTTCCAACAGCTATTCAATTATATGATCTTCAAGATAAACTTGGTTTAGGACAACCAAGTAAAGTAATTGATTGGTTACTTGAAGCAACAAAATGTGACATTGATAAATTACCACCACTTCAATTTCCTCAAAGCTTTTCACAATTTCATCATCTTCATCCACAAACCCTACTTCCTTTTCATGATCAATCAAGTAATGTCTTATCTCATGAACTTTCTCTTGGTCCTAATTTATATGATCCTAATTCCACATTTGTTGGAATTCAAAATCTTATGGCAAGGTCAAAATTTTGGGACATGGATTCAAGGATTAATAATAAAGGTAAAGAAGTTGAAAGAGAGTACTTTGGTGATAAAGGTAAGTGGATTAAAACTAATGATGAAGAAAATCAAGGTGGAGAAGCTAGTTACAATAATTTTCATCAAGTTTCAACTCAAAAGCTTTTTCCTATGGAGACTCACTCTAATTTTCTAAACAATGCTATGCCATCATATAACAACTACCATTCGGAAGCTTCTAATTTGTCTTTATCTCAATTTGGAACTAGTCATGGAATGTTCCAATCTCATCAACAAGTAGATCCTAATCAAAGTAGTGGAAATAATGCTTTGCAATTTCCATTTTCTTTACCAAATTCACAATTATTTTTTGGTCCTTCATCTTCTACTACACCACCATCATCATCATCATCACTTTTGAATCCTTTTATGAACAATTCAATTGAAAATGATCCAAGAGTACAATTCAATCATTTTCAGTTCATAAACTCAAGTACTTCTTCTCAAGCTATGCCTCATCCTCTCATTCCATCTTTTCATCACTCATTCAATTCACCTCCAATTAGACCTTTTCCATTACCATTTAGCTCTAGACTTCTAGATTCCGATAACAATAACAACGGTGACCAACCGGATAATAAGGGTAGCCGTGATCGTTCTTGA 1173 0.3316 MMSSSRDGNYQEKQGDENNMTNIEKISKTPSSTSRQWSTSSLRNPRIVRVSRTFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLGQPSKVIDWLLEATKCDIDKLPPLQFPQSFSQFHHLHPQTLLPFHDQSSNVLSHELSLGPNLYDPNSTFVGIQNLMARSKFWDMDSRINNKGKEVEREYFGDKGKWIKTNDEENQGGEASYNNFHQVSTQKLFPMETHSNFLNNAMPSYNNYHSEASNLSLSQFGTSHGMFQSHQQVDPNQSSGNNALQFPFSLPNSQLFFGPSSSTTPPSSSSSLLNPFMNNSIENDPRVQFNHFQFINSSTSSQAMPHPLIPSFHHSFNSPPIRPFPLPFSSRLLDSDNNNNGDQPDNKGSRDRS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4476 390 Pfam TCP family transcription factor 56 125 IPR017887 -
Tpr3g4476 390 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Tpr3g4476 390 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 384 IPR005333 GO:0003700
Tpr3g4476 390 MobiDBLite consensus disorder prediction 368 390 - -
Tpr3g4476 390 MobiDBLite consensus disorder prediction 1 42 - -
Tpr3g4476 390 PANTHER TRANSCRIPTION FACTOR TCP17 1 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4476 Tpr-Chr3 49846957 49849487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4476 11 355 TCP Transcription Factor Family AT5G60970 39.842 5.18e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tpr3g4476 TCP 8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4476 - - cam:101498052 557.37