Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4472 ATGGCTTTATTTGGTAGAGTTGGGAATTTATTAAGGACTGCAGCAAATACAAAGATCACTTCAGAGTTGAAATTACGATCTTTCCCGTCTGTTTTCCAAGCCATACGGTGCTTTACCGGTCCTCCGAGTACTCCGTCTACAAAGCTGTTTGTGGGAGGTATTTCCTATTCTACTGATGAACAAAGTTTGAGGGACGTTTTTGCAAAATATGGCGAAGTTGCTGACGTGAGGATTATTATGGATCGCGAAACTGGTAACTCCAAAGGATTTGGCTTCGTTACTTACAATTCAGTCGAGGAGGCATCAAGTGCCATTCAAGCCTTGGATGGACAGGAATTGCATGGTCGCCGAGTTGGTGTCAATTTTGCCAATGAAAGACCCCGTGGATATGGTGGTGGTGGATCTTACGGAAACACTCCCTACGGAGGTGGAGGTGATGGTGGATATCGAGGTGGTTACAGTAACTCTACATACAGTGCTCCTTCAAGCGATGGTGGGTATGGTGGTTATGGAAGCACTTATAATGATGGTGGGTATGGTGGCAACAATGTGAATTATAGTGCTCCTGTGGGAACTGGTGAAAGCAATACTGTTAACTATGGTAGTCCTCCTGGTGTTGGTGGTTATGGTGGAAACAACCCAAATTATGGTGCTCCTGTGGGCGGTAGTGAAAGCAATGCTGTTAACTATGGCAGTGCTCCAGCTGTTGGTGGTTATGGTGGTAACAATGGGAGTTATGGTGCTTCTGATCCTGTTAACTACGGTAGTGCACCTGGCGTTGGCGGTTATGGAGTAGGTGGTGGTGAAAGCAATTCTGTTAATTATGGTGGTGGTTATGGCGGTGGTAACAATGCAAATTATGGTGCTCCTGTGGGTGGTGGAGACGTCAATTCTGTTAACTATGGTACTGCTCCTGCTGATGGTGGTTATGGTGCTGCTACTGGATTTGGCAATAGTACTCCTGGTAGTGGTCCTAGCAATGGTTTCGCCAGTAGTGGAGGATTTGGATATGGCGGAAGTGGTCAGGAAAATTTCAGGAGTGATGATCATGAAGTTGATGCTTTTGCTAAACGGGGTTGA 1080 0.4602 MALFGRVGNLLRTAANTKITSELKLRSFPSVFQAIRCFTGPPSTPSTKLFVGGISYSTDEQSLRDVFAKYGEVADVRIIMDRETGNSKGFGFVTYNSVEEASSAIQALDGQELHGRRVGVNFANERPRGYGGGGSYGNTPYGGGGDGGYRGGYSNSTYSAPSSDGGYGGYGSTYNDGGYGGNNVNYSAPVGTGESNTVNYGSPPGVGGYGGNNPNYGAPVGGSESNAVNYGSAPAVGGYGGNNGSYGASDPVNYGSAPGVGGYGVGGGESNSVNYGGGYGGGNNANYGAPVGGGDVNSVNYGTAPADGGYGAATGFGNSTPGSGPSNGFASSGGFGYGGSGQENFRSDDHEVDAFAKRG* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4472 359 SMART rrm1_1 48 121 IPR000504 GO:0003723
Tpr3g4472 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Tpr3g4472 359 SUPERFAMILY RNA-binding domain, RBD 41 154 IPR035979 GO:0003676
Tpr3g4472 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Tpr3g4472 359 MobiDBLite consensus disorder prediction 320 359 - -
Tpr3g4472 359 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 294 - -
Tpr3g4472 359 Gene3D - 40 187 IPR012677 -
Tpr3g4472 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 294 - -
Tpr3g4472 359 MobiDBLite consensus disorder prediction 344 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4472 Tpr-Chr3 49807791 49810746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4472 49 133 Eukaryotic Initiation Factors Gene Family AT3G16380 31.395 2.49e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4472 K12741 - gmx:100799124 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4472 3 49807791 49810746 Tpr3g4472 3 49807791 49810746 ECH