Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4468 ATGGCAGTTCAAAGCTCCACTTCCAGTAAACCACAACCTCCAAACACCGTTTCTCACGACCATTTCTTTGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGCGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACTCGAATACAGAGTCAAGCTATTCTAAATGGTGTTAAGAACCAAAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGACGGATTAAGAGGCTTTTACAGGGGTGTAATGCCTGGTGTTACTGGGTCTCTTGCAACTGGAGCAACATATTTTGGTGTCATAGAGTCTACTAAAAAGTGGATTGAGGAATCACATCCTAGCCTTGGAGGTCATTGGGCACATTTCATCGCTGGAGCTGTTGGAGATACACTTGGTTCTGTAGTATATGTTCCATGCGAAGTGATAAAGCAGCGTATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCTACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGACTATTATAAAGGGATGTTCCATGCAGGCTGCTCAATATGGAGAACACAGGGCTTCAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTTCCATTTGCTGGTTTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGTCACAGAGCATGGGAAGCAAAGATGGATATCTGACCCAAAATGGCATGTTAATAATTCATTTGAGGGACTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGATGTTGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTTAGGTATAATGGTTGGTTGGATGCAATGTACAATATATGGGCTAAGGAAGGCATGAAGGGGATGTTTAGGGGTAGCATTCCCAGAATTGCATGGTACATTCCGGCTTCAGCGCTTACATTCATGGCTGTGGAATTTCTCAGAGAAAATTTTAATGAAAGAGCTCCTAATGGTGATTTGAGAGATGTTACCAGATTATCAGTAGAAAAGAAGAAATCTATGCAGGAGGCTACTTAG 1077 0.429 MAVQSSTSSKPQPPNTVSHDHFFVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVMPGVTGSLATGATYFGVIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGCSIWRTQGFKGLYAGYLSTLARDVPFAGLMVVFYEALKDVTEHGKQRWISDPKWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTFRYNGWLDAMYNIWAKEGMKGMFRGSIPRIAWYIPASALTFMAVEFLRENFNERAPNGDLRDVTRLSVEKKKSMQEAT* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4468 358 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 355 - -
Tpr3g4468 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Tpr3g4468 358 Pfam Mitochondrial carrier protein 246 333 IPR018108 -
Tpr3g4468 358 Pfam Mitochondrial carrier protein 23 114 IPR018108 -
Tpr3g4468 358 Pfam Mitochondrial carrier protein 122 228 IPR018108 -
Tpr3g4468 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Tpr3g4468 358 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Tpr3g4468 358 Gene3D Mitochondrial carrier domain 172 348 IPR023395 -
Tpr3g4468 358 Gene3D Mitochondrial carrier domain 3 171 IPR023395 -
Tpr3g4468 358 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 355 - -
Tpr3g4468 358 SUPERFAMILY Mitochondrial carrier 21 327 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4468 Tpr-Chr3 49781408 49786591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4468 123 337 Chloroplast and Mitochondria Gene Families AT2G30160 24.186 6.83e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4468 - - gmx:100790921 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4468 3 49781408 49786591 Tpr3g4468 3 49781408 49786591 ECH