Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4456 ATGGGAAGAAGGTTCCAACAACAAACCCTTCTCCCTCGTATCGATTCATGCAAATCTAAATTCTCAACCGCCGATGAAATTGTCCATTATCTCCGTTCAACTTACCCCGATTACCACCGTGTCAAGTCTCAAACACTTCTTTACTATGTTAACATTGCTCTTCTTTCTTCTAACAACAACAACAACAAACCCGCCGCCAGAGAACAAATCGACCAGACTGCTTCTCAATTAACCAAACTCTCTCTTTCAGAAAACAACGGCGGTGGCGACGCCGGCGGTGGCAATGATGTTAAAAATGTTAAAAAAGTTGAGAATGTTGTTAAGAATGTTGTGAAGAGGCCGATGTTTAAGGATTTAGGTGGGAATGGAATGGAGAAGATAAAGAATGAATTGGAAGCACCTCTTATGTTAGTGTGTCAACCTAAGTTGTGTAGAGAGTTTGGATTGAAACCAATTACTGGAATTTTGTTACATGGTCCACCTGGTTGTGGAAAAACTAGACTTGCTCATGCTATTGCTAATGAAGCTGAACTTCCTTTTTATCCTATTTCTGCTACTCAAGTTGTTACTGGTGTTGCTGGCGAATCTGAAAATAATATTAGAGAGCTTTTCTCTAAAGCCAAAAAGACTGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTAAGAGAGGAGAGAATTCACAGCGACAGATGGAGACACGAATTGTGACGCAGTTATTAACTTGCATGGATGAAGCTTGTAGTAGTTCAGGCAGTTCTGATGAACCTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTTGATGCTATTGACTCTGCTTTGAGAAGGCCTGGTCGCTTTGCTCTTGAGATTGATGTTGGCATTCCTGATGAATCTGCCAGGGAGGCGATACTTTTCTTGCATACTCGAAATTGCAGTGACAAGCTTGACAGTTCGGTTGATCTGCAAAAAATAGCAAGGTCTACTCCGGGATTTGTTGGTGCTGATTTGGAAGCTCTAGTCGGCAAAGCTGGCGAACGGGCATTGGACCGGATAATTGATGAAAGGAAACACGAATTATCTAAAGATCTCATGAGTGAAACTAATGCCGGCAGGTGGAAGAAACCTTGGTTGCCTCAAGAAATAAACAGATTTACAATCAAAATGACTGATTTCGAGGAAGCAGTCAAAATGGCACAACCTTCATTAACAAGAGAAGGATTCTCTCCCGTTCCTGATGTTAAATGGGAAGACGTTGGTGCACTTGATCATGTAAGAGAGGAGTTTGATCAACACATTGTAAAGCGCATAAAAAACCCCGACGTTTATGAGGGACTTGGATTGGATCGCGATACGGGATTTTTGCTTTACGGGCCTCCAGGTTGTGGTAAAACACTGATAGCCAAAGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTTATATTAAGGGTCCTGAGCTTCTAAATAAATTTGTTGGAGAAAGCGAGCGTGAAGTCCGGAAATTATTTTATCGTGCAAGGGCATGTGCACCATGTATACTTTTTTTTGACGAGGTGGATGCTATGACAACAACAGAACATGGAAATGAAGGTGGACGGGTTATTGACGGAATACGGAAACAGTTGCAGATTGAATTAGATGGCGCAGAGCAACGCAAAGGTGTTTTCGTGATTGGTGCAACAAATAGGCCTGAGGTGATCGACAGTGCTCTCCTACGTCCGGGTAGATTTGGCAATCATATTTATATTCCTGTTCCAAGCACAGACGGCCGTGTCTCGATATTGAAAGCTCTTGCAATGCATAAGGAAGCTCTTGCAAGGCGTATGGAAAATCGTGCAAGGTTTAAGCTTATGCGTATTGATGCCAGTGTGGATTTGAGCTCCATTGCAAGATTGAAAGCTTGTGAAAACTTTAGTGGTGCCGATCTTGCTGCATTGATGGACAAAGCAATATTGGCTGCTCTCGAAGAGAAGCTGACCACAACAGAGAAAAAAAGTGATACATTGACTGTCGAGTCAAGGCATTTTGAGGTTGCGCTAAGCAAAGTCTCTCCCTCTGTGTCAGAAAAGCAAATGGAATACTATGAGGATATTTCGAAGCTCCTTAAAGCCGCATGA 2112 0.4233 MGRRFQQQTLLPRIDSCKSKFSTADEIVHYLRSTYPDYHRVKSQTLLYYVNIALLSSNNNNNKPAAREQIDQTASQLTKLSLSENNGGGDAGGGNDVKNVKKVENVVKNVVKRPMFKDLGGNGMEKIKNELEAPLMLVCQPKLCREFGLKPITGILLHGPPGCGKTRLAHAIANEAELPFYPISATQVVTGVAGESENNIRELFSKAKKTAPSIIFIDEIDAIAKRGENSQRQMETRIVTQLLTCMDEACSSSGSSDEPTGYVLVIGATNRLDAIDSALRRPGRFALEIDVGIPDESAREAILFLHTRNCSDKLDSSVDLQKIARSTPGFVGADLEALVGKAGERALDRIIDERKHELSKDLMSETNAGRWKKPWLPQEINRFTIKMTDFEEAVKMAQPSLTREGFSPVPDVKWEDVGALDHVREEFDQHIVKRIKNPDVYEGLGLDRDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKFVGESEREVRKLFYRARACAPCILFFDEVDAMTTTEHGNEGGRVIDGIRKQLQIELDGAEQRKGVFVIGATNRPEVIDSALLRPGRFGNHIYIPVPSTDGRVSILKALAMHKEALARRMENRARFKLMRIDASVDLSSIARLKACENFSGADLAALMDKAILAALEEKLTTTEKKSDTLTVESRHFEVALSKVSPSVSEKQMEYYEDISKLLKAA* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4456 703 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 23 697 - -
Tpr3g4456 703 SMART AAA_5 448 585 IPR003593 -
Tpr3g4456 703 SMART AAA_5 151 295 IPR003593 -
Tpr3g4456 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 395 IPR027417 -
Tpr3g4456 703 ProSitePatterns AAA-protein family signature. 263 281 IPR003960 GO:0005524|GO:0016887
Tpr3g4456 703 Gene3D - 410 694 IPR027417 -
Tpr3g4456 703 ProSitePatterns AAA-protein family signature. 553 571 IPR003960 GO:0005524|GO:0016887
Tpr3g4456 703 CDD AAA 451 582 - -
Tpr3g4456 703 Gene3D - 584 679 - -
Tpr3g4456 703 Gene3D - 294 404 - -
Tpr3g4456 703 CDD AAA 154 292 - -
Tpr3g4456 703 Pfam AAA+ lid domain 317 353 IPR041569 -
Tpr3g4456 703 Pfam AAA+ lid domain 621 675 IPR041569 -
Tpr3g4456 703 Gene3D - 94 292 IPR027417 -
Tpr3g4456 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 410 700 IPR027417 -
Tpr3g4456 703 Pfam ATPase family associated with various cellular activities (AAA) 453 582 IPR003959 GO:0005524|GO:0016887
Tpr3g4456 703 Pfam ATPase family associated with various cellular activities (AAA) 155 291 IPR003959 GO:0005524|GO:0016887
Tpr3g4456 703 PANTHER AAA-FAMILY ATPASE 23 697 - -
Tpr3g4456 703 Coils Coil 650 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4456 Tpr-Chr3 49610059 49615797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4456 147 684 Calmodulin-binding Proteins AT3G56690 35.025 2.38e-106 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4456 K14571 - qsu:112005427 715.301