Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4455 ATGGGAAAGTTCCAAACAACCCTTCTCCGTCAAATCGATTCCTGCAAATCAAGTTTCTCAACCGCCGATGAAATCGTCAACCATCTTCGTTCAACTTACTCCGATTACCACCACAATGATTATCCATCACTCCTTCAGTTAGTTCAGAACGCTCTTCCGGCTACTCACACCACCACCAATCAATCTTCTCGAAAGAGACATCGCATTCATCAATCTGAAACTTCTACTTCCCCTCATTTTGCTCCCGAGAGTGGCGGCGAGAAAGCTGTTAACGGCGCCGGTGGTGGTGGTGGTGAGAAAGAAACTTCTACTTCCCCTGATTTTGCTCCCGAGATTAGCGGCGAGAAAGCTTCTAACGGCGCCGGCGGTGGCGGTGGTGGTGGTGGTGAGAACGAAACTTCTACTTCCCCTGATTTTGCTCCCGAGATTAGCGGCGAGAAAGCTTCTAACGGCGCCGGCGGTGGTGGTGGTGGTGGTGGTGAGAAAGAAACTTCGATTTCCCCTGATTTTGCTCCCGAGAGCAGTGGTGAGAAAGCTGTTAACGGCGCCGGCGGTGGTGGTGAGAAAGAAACTTCTAAAACTTCTCCAAAGAGACGTAAGATTGCTGAATCTGAATCTGAATATGATTATGATGATTTTGATGATGATGATGATGATGATGATGCTTATGATGATGATGATGAAAGAATGCAAAATGTGGAATCGACGAGCAAGGGAATTTCGTCTGAGTATTCTTCCGATAACGGAGACAGAGTAGTGTCAAAGACAGAAATGAAACGGGGACAACCGGTTAAGTTAATGCAGTTTTGGACCGGTGGTAGTGTCGGTGTTGGTGGTGGTGATGGAAAGAAGAAAATGAAGGGGACTATGTTTAAGGATTTAGTTGGAAATGAGATGAAGAAGATAATTAAAGAATTGAAGATAACTGTGAAATTACTGCGTCAGCCTGAATTGATTAGAGAGTATGGAATGAAACTGAAAAGAGGAATTTTGTTACATGGTCCTCCTGGTTGTGGAAAAACTAGACTTGCTCATGCTATTGGGAATGAAGCTGAAGTTCCATTTTATCCTATTTCTGCTACTGATGTTATTACTGCTGTCCCTGGTGGATCTGAAGAAAAGCTTAGAGAGCTTTTCGCTAAAGCAAAAAGGACGGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTTCAAAACGAGAGGATTTAAAGCGACAGGTGGATTCACGAATCGTGACACAGTTATTAACTTGCATTGATGGAGATGGTTATTCAGGGAGTTCTGATAAACCTACTGGTTATGTTCTTGTAATTGGAGCCACAAATAGGCTCGATGCTGTTGACTCTGCTTTGAGAAGGCCTGGTCGTTTTGATCGAGAAATTCTTGTTGGCATTCCTGATGAATCTGCCAGGGAGGAGATCCTTGTCCTGCACACACGAAATTGCAGTCATAAGCTTGACGATTCGATTGATCTGCGAAAAATAGCCAGGTCCACGCCAGGATTTGTTGGTGCTGATTTAGAAGCTCTTGTTGGCGAAGTTAGCGAACTGGCATTTCAGAGGGTAATGGATGAAATGGAACATGAATCACATAATGATCTCATGAGTGATGATGAAGGCCGGTGGAAGGAACATTGGCCACCCCAACAAAAAAATAAATTTGCAATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAACCTTCGTTAACAAGAGAAGGATTCTCTCCCATTCCTGATGTTAAATGGGAAGATGTTGGTGCACTTGATCATGTAAGAGAGGAGTTTGATCAACACATTCTAAAGCGCATAAAAGACCCTGACATTTATGAGGGACTTGGGTTGAATTGTGACACGGGTTTTTTGCTTTACGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGAAGCGGGAGCTAATTTCATTTATATTAAGGGTCCCGAGCTTCTAAATAAATATGTTGGAGAAAGCGAGCATGGAGTCCGGAAATTATTTGATCGTGCAAGAGCATGTGCACCATGTATACTTTTTTTTGACGAGGTGGATGATTTGTCAACAAAACATGTTAATGAAGGAGGTACACGGGTTATTGAAAGAGTGCTCAAACAGTTGCTTGTTGAGTTAGACGGTGCAGAGCAACGCAAAGGTGTTTTTGTGATTAGTGCAACAAATAGGCCTGAGGTGATGGACAGTGCTCTCCTACGGCCGGGTAGATTTGGTAATCTTATTTATATTCCTCTTCCAAGTCCAGACGATCGTGTTTCGATATTGAAAGCTCTTGCAAGGGGTAAGGAAACGCTTGCAAGGCGTGATCAAACTCGTGCAAGGTTTAAGCTTATGCCAATTGATGCTAGTGTGGATTTGTGCGCCATTGCAAGAATGAAAGCTTGTGAAAACTTTAGTGGCGCTGATCTTGCAGCATTGATGGACAAAGCAATATTGGCTGCTCTTGAACAGAAGCTCACCACAACCGGGGAAAAAAGTGATACATTGACTGTCAAGGCTAGGCATTTTGAGGTAGCACTGAGTAAACTATCTCCCTCTGTGTCCGAAGAGCAAAGGAAGCACTATCAGCGACTTTCAAAGAACCTTAAAGCAGCGTGA 2631 0.4371 MGKFQTTLLRQIDSCKSSFSTADEIVNHLRSTYSDYHHNDYPSLLQLVQNALPATHTTTNQSSRKRHRIHQSETSTSPHFAPESGGEKAVNGAGGGGGEKETSTSPDFAPEISGEKASNGAGGGGGGGGENETSTSPDFAPEISGEKASNGAGGGGGGGGEKETSISPDFAPESSGEKAVNGAGGGGEKETSKTSPKRRKIAESESEYDYDDFDDDDDDDDAYDDDDERMQNVESTSKGISSEYSSDNGDRVVSKTEMKRGQPVKLMQFWTGGSVGVGGGDGKKKMKGTMFKDLVGNEMKKIIKELKITVKLLRQPELIREYGMKLKRGILLHGPPGCGKTRLAHAIGNEAEVPFYPISATDVITAVPGGSEEKLRELFAKAKRTAPSIIFIDEIDAIASKREDLKRQVDSRIVTQLLTCIDGDGYSGSSDKPTGYVLVIGATNRLDAVDSALRRPGRFDREILVGIPDESAREEILVLHTRNCSHKLDDSIDLRKIARSTPGFVGADLEALVGEVSELAFQRVMDEMEHESHNDLMSDDEGRWKEHWPPQQKNKFAIKMSDFEEAAKMVQPSLTREGFSPIPDVKWEDVGALDHVREEFDQHILKRIKDPDIYEGLGLNCDTGFLLYGPPGCGKTLIAKAVANEAGANFIYIKGPELLNKYVGESEHGVRKLFDRARACAPCILFFDEVDDLSTKHVNEGGTRVIERVLKQLLVELDGAEQRKGVFVISATNRPEVMDSALLRPGRFGNLIYIPLPSPDDRVSILKALARGKETLARRDQTRARFKLMPIDASVDLCAIARMKACENFSGADLAALMDKAILAALEQKLTTTGEKSDTLTVKARHFEVALSKLSPSVSEEQRKHYQRLSKNLKAA* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4455 876 MobiDBLite consensus disorder prediction 191 206 - -
Tpr3g4455 876 Gene3D - 583 867 IPR027417 -
Tpr3g4455 876 Gene3D - 468 577 - -
Tpr3g4455 876 Pfam ATPase family associated with various cellular activities (AAA) 330 465 IPR003959 GO:0005524|GO:0016887
Tpr3g4455 876 Pfam ATPase family associated with various cellular activities (AAA) 626 756 IPR003959 GO:0005524|GO:0016887
Tpr3g4455 876 Pfam AAA+ lid domain 794 848 IPR041569 -
Tpr3g4455 876 Pfam AAA+ lid domain 491 529 IPR041569 -
Tpr3g4455 876 Gene3D - 281 466 IPR027417 -
Tpr3g4455 876 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 77 872 - -
Tpr3g4455 876 PANTHER AAA-FAMILY ATPASE 77 872 - -
Tpr3g4455 876 Gene3D - 757 852 - -
Tpr3g4455 876 MobiDBLite consensus disorder prediction 56 216 - -
Tpr3g4455 876 MobiDBLite consensus disorder prediction 228 252 - -
Tpr3g4455 876 CDD AAA 624 756 - -
Tpr3g4455 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 583 872 IPR027417 -
Tpr3g4455 876 SMART AAA_5 621 758 IPR003593 -
Tpr3g4455 876 SMART AAA_5 326 469 IPR003593 -
Tpr3g4455 876 ProSitePatterns AAA-protein family signature. 437 455 IPR003960 GO:0005524|GO:0016887
Tpr3g4455 876 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 568 IPR027417 -
Tpr3g4455 876 MobiDBLite consensus disorder prediction 234 249 - -
Tpr3g4455 876 CDD AAA 298 466 - -
Tpr3g4455 876 ProSitePatterns AAA-protein family signature. 726 744 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4455 Tpr-Chr3 49595941 49602273 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4455 525 857 Calmodulin-binding Proteins AT3G56690 38.623 7.55e-65 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4455 K14571 - tcc:18593187 716.842