Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g4451 | ATGGAAGAAGATCAAGAAGTGATTAAACACGTTTGCAAAATCTGCAGAAAGAGCTTTTCTTGTGGTAGATCATTAGGTGGTCACATGAGGTCACATGATAAGGATCATGATCATGATGATGATGGTGATAATGATGAGTTTGTTGTTGATGCTGCTGCAACAACAATGAAGAAAGAACAAGGTTGTTCTGAAGGGTATTATGGTCTTAGAGAAAATCCAAAGAAAACTTGGAGAGTACTCAATGATTCAACTATTGATGAAGATTCAACTTTTGATGTTGCTTTGGATAAACTGTGCAAGGAATGTGGTAAAGGTTTTCAATCTATGAAAGCTTTGTTTGGTCACATGAAGTGTCATTCGGAGAAAGAACGGGGTTCGAGTAATAAGAAGAAGAATCATAGTTTTGAATTTGATGATGAACATGAACAAGAACAAGAAGAATCTAATGCAACTGTTCTTCCAAATAGAAAGAGAAGATCCAAAAGAAGATTAAGAACAAGGTACATCAATAGTGGTAACAACACTTCTTCTTCTGTTGTGAATTTTGTTGCAAATTCTTTAGTTTCAAGTTCTGTTTCCGACGAAGAAAAAGAACAAGAAGTTGCTATGACTTTGATTATGCTTAGTAGAGATGTTAGACCTTGGTGTGGTATCAATTTTATTGCTGAATTTTCTGATAATAATAATGATGATAACAACTCTTTGGAATTAGAAGCTCCATTAACTCATTTAGTTTCTAAGATTGAAGAGAAAAAAAGGGTTATCTCAAATGGTTCTGAAATTGTTAAAGTGACTAAAAAGGCAAATAAGTTGGATTTTGGTAAAAGTTTGGAAATTTTTGCTGATGAGAGTGAAGGAAATGATGGATTGAAGATGAAGAAAGCTAAGAAAACTAGAGTTTCTGTTATTGACAATGGAAAGGATGATGATAAGAAGGAAAAGATGGAGATTGAGGTTGATTCTGATTCAGCATTTGAGGTCAATATAAGATCAAAATCAGGTACTAGTAATCCTACAAAGTACACTTCATTGAAGGAAAAGTTTTTTGATTCTGAAACCAAGGTTAAACTTATATCAGAAGGTGAATCAAACAAGAGAAAATGTAATAAGAGAGGAAAATTTGAGTGTGCTACTTGCAATAGAATTTTTCAATCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAGATCAAAAGGGTGTTCTGCTTCAAGAATTGATCAAAGTAGTGAAAATGAAAACATTGCTGAATTGGAAGTTGAAGTAGATGTGAAGATCAATGTTAATGCTGAGGGAAGAAGCTTAGCAAGTGAAAGAGTTGTGCTTGAGGAACAAGTTCCTGAAATAAGGAACTTCCTTGATCTTAATCTTCCTGCTGCTGCAAGTATTGATGAAGAAAGAGGCAATGGCAGCAGCCATTCTGAGATTTACAAATCATGGTGGTTAGTAGGAGGCAGCAGTCTCAATCAAGATGCAATGGCAGTAGGCCTACTATCAAACTAG | 1506 | 0.3479 | MEEDQEVIKHVCKICRKSFSCGRSLGGHMRSHDKDHDHDDDGDNDEFVVDAAATTMKKEQGCSEGYYGLRENPKKTWRVLNDSTIDEDSTFDVALDKLCKECGKGFQSMKALFGHMKCHSEKERGSSNKKKNHSFEFDDEHEQEQEESNATVLPNRKRRSKRRLRTRYINSGNNTSSSVVNFVANSLVSSSVSDEEKEQEVAMTLIMLSRDVRPWCGINFIAEFSDNNNDDNNSLELEAPLTHLVSKIEEKKRVISNGSEIVKVTKKANKLDFGKSLEIFADESEGNDGLKMKKAKKTRVSVIDNGKDDDKKEKMEIEVDSDSAFEVNIRSKSGTSNPTKYTSLKEKFFDSETKVKLISEGESNKRKCNKRGKFECATCNRIFQSYQALGGHRASHKRSKGCSASRIDQSSENENIAELEVEVDVKINVNAEGRSLASERVVLEEQVPEIRNFLDLNLPAAASIDEERGNGSSHSEIYKSWWLVGGSSLNQDAMAVGLLSN* | 502 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g4451 | 501 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 99 | 119 | IPR013087 | - | |
| Tpr3g4451 | 501 | SMART | c2h2final6 | 10 | 32 | IPR013087 | - | |
| Tpr3g4451 | 501 | SMART | c2h2final6 | 374 | 396 | IPR013087 | - | |
| Tpr3g4451 | 501 | SMART | c2h2final6 | 97 | 119 | IPR013087 | - | |
| Tpr3g4451 | 501 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 97 | 124 | IPR013087 | - | |
| Tpr3g4451 | 501 | MobiDBLite | consensus disorder prediction | 120 | 139 | - | - | |
| Tpr3g4451 | 501 | SUPERFAMILY | beta-beta-alpha zinc fingers | 9 | 36 | IPR036236 | - | |
| Tpr3g4451 | 501 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 376 | 396 | IPR013087 | - | |
| Tpr3g4451 | 501 | Pfam | C2H2-type zinc finger | 10 | 32 | - | - | |
| Tpr3g4451 | 501 | Pfam | C2H2-type zinc finger | 374 | 398 | - | - | |
| Tpr3g4451 | 501 | Pfam | C2H2-type zinc finger | 99 | 121 | - | - | |
| Tpr3g4451 | 501 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 433 | 501 | - | - | |
| Tpr3g4451 | 501 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 428 | - | - | |
| Tpr3g4451 | 501 | MobiDBLite | consensus disorder prediction | 120 | 167 | - | - | |
| Tpr3g4451 | 501 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 374 | 401 | IPR013087 | - | |
| Tpr3g4451 | 501 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 10 | 37 | IPR013087 | - | |
| Tpr3g4451 | 501 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 12 | 32 | IPR013087 | - | |
| Tpr3g4451 | 501 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 433 | 501 | - | - | |
| Tpr3g4451 | 501 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 428 | - | - | |
| Tpr3g4451 | 501 | Gene3D | Classic Zinc Finger | 1 | 124 | - | - | |
| Tpr3g4451 | 501 | SUPERFAMILY | beta-beta-alpha zinc fingers | 98 | 396 | IPR036236 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g4451 | Tpr-Chr3 | 49552596 | 49554871 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g4451 | 9 | 229 | C2H2 Transcription Factor Family | AT1G26610 | 36.975 | 3.83e-27 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g4451 | - | - | mtr:MTR_3g023760 | 491.5 |