Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4450 ATGTACCCTCAACAACAGTACCAAGTTCCACCTTTCAATTTACAGCAACAACAACAACAACAACCCTATTATTCATCATCACTTTATCCTCCTGGTACTGACCCAGTTGCAAATTCAACATCTTTTTCTGCTCCTGCTTCTGTTTATGCGTCACAAACAACAGATTATCCCAATTGGATCGGTCCACAATCTGAACATATCGTATATGATCCTGCTGTTGGTTCATCGTACGAGGCTTCAGCAGCGTCTGCAAGTTTGCCTCCTGCATATGCTACATGGTCATATCCAATTTATGGCAATGATACTACAACAGTGTTGCCTAACCAAACCAAAGTCTCCAAAGCTTTGAGATGTGAAGTGTGTAAAATTGATCTCAATAGCAAAGATTCTTATGAAAAGCACATAGCTGGAAAGAAACACAAGAAGAATTTACAGGTTCGCTTGTTGTCTAATAATGGCATTGGTCCATCCAGTGCTGAATTCAAACGTAGCAGTATTGGCCCATTGCAAAAAGCTGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAGTTTGCAAGATTACTTGTAACAGTATGGATATTTACATTACACACTTAGCCGGCAAGAAACATTTGAAGAACTTGGAGAAACTGTCAAATCCAAAAACCGATGCCGGCATCGGTGCCACTACCACCTCCACTGCAGCAAATACTTTAATCGGACCACAGGAAAAGCCAGATACCGATAAACCAAATAAGGCACCAGAACTTGATATCGAGACAAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGCAGTTAATCATATTAAAATGTGCACTTTATGCAATGTAGTGTGTAATAGCCAGATAGTGTTCGATTCTCACCTTGTTGGCCAAAAACATGCTGCTATGGCAAAGAAGGCAGGATCAAGCACTGGTTGA 927 0.4088 MYPQQQYQVPPFNLQQQQQQQPYYSSSLYPPGTDPVANSTSFSAPASVYASQTTDYPNWIGPQSEHIVYDPAVGSSYEASAASASLPPAYATWSYPIYGNDTTTVLPNQTKVSKALRCEVCKIDLNSKDSYEKHIAGKKHKKNLQVRLLSNNGIGPSSAEFKRSSIGPLQKAAKKIKVAQSAWCEVCKITCNSMDIYITHLAGKKHLKNLEKLSNPKTDAGIGATTTSTAANTLIGPQEKPDTDKPNKAPELDIETKKRKVVEGGAAVNHIKMCTLCNVVCNSQIVFDSHLVGQKHAAMAKKAGSSTG* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4450 308 Pfam Zinc-finger of C2H2 type 274 296 - -
Tpr3g4450 308 Pfam Zinc-finger of C2H2 type 117 140 - -
Tpr3g4450 308 Pfam Zinc-finger of C2H2 type 183 206 - -
Tpr3g4450 308 SUPERFAMILY beta-beta-alpha zinc fingers 180 213 IPR036236 -
Tpr3g4450 308 MobiDBLite consensus disorder prediction 230 253 - -
Tpr3g4450 308 PANTHER ZINC FINGER RNA-BINDING PROTEIN 6 145 - -
Tpr3g4450 308 PANTHER ZINC FINGER RNA-BINDING PROTEIN 157 305 - -
Tpr3g4450 308 SUPERFAMILY beta-beta-alpha zinc fingers 91 146 IPR036236 -
Tpr3g4450 308 Gene3D Classic Zinc Finger 250 303 - -
Tpr3g4450 308 Gene3D Classic Zinc Finger 101 147 - -
Tpr3g4450 308 Gene3D Classic Zinc Finger 168 213 - -
Tpr3g4450 308 PANTHER - 6 145 - -
Tpr3g4450 308 PANTHER - 157 305 - -
Tpr3g4450 308 SUPERFAMILY beta-beta-alpha zinc fingers 268 302 IPR036236 -
Tpr3g4450 308 MobiDBLite consensus disorder prediction 1 23 - -
Tpr3g4450 308 SMART c2h2final6 116 140 IPR013087 -
Tpr3g4450 308 SMART c2h2final6 272 296 IPR013087 -
Tpr3g4450 308 SMART c2h2final6 182 206 IPR013087 -
Tpr3g4450 308 SMART ZnF_U1_5 179 213 IPR003604 GO:0003676|GO:0008270
Tpr3g4450 308 SMART ZnF_U1_5 269 303 IPR003604 GO:0003676|GO:0008270
Tpr3g4450 308 SMART ZnF_U1_5 113 147 IPR003604 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4450 180 302 C2H2 Transcription Factor Family AT5G61190 30.081 5.65e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g4450 zf-met 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4450 - - cam:101495339 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4450 3 49536835 49542800 Tpr3g4450 3 49536835 49542800 ECH