Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4443 ATGGTGGAACTCACAGAACAACAAAAACAACAAATGGAAGCGAATCGAATTGCTGCATTAGCAAAACGAAAAGCTTTCTTAGAATCCAATTCTCAACAACCACAACGAAACCCTTGGCATCTTTTCAAATGCCAGAAAATTTCTCAACCTAAACCTGAACCCGAACCTGATTTCAAATTCCTCGCGAGACTTGAAATTTGTTCGCATGATTCTTTCACTATTACTCCTCTTCCTGTTCCTAATTTCAATTTTCCAACTTATGATACTTGTTTCGCCATTCTCAATAACATTCTCTCACGAATGGATGTGGATCCATCACATTTTACTCAGACAAGTGCGGGCGGGAAAGCCTGTGTGTTCAAATTAACGGACTACCGTAGTGTTTTGAAGCTGTTAAAGGCAGAGATTAAGGTGGAAGAGATTCCTTGGAACACTTTCAATGTGGTTGAGAAGCTTTCACATTTGGAGGGGAGGTGGACTCCGGTGAGACCGGAACATTTGAGTGATGATGAGGTCGATGGTTTGATTAGAAAGTTGCCTAAGAGTTTACTTGATGTATTGTTGCCATTTCAAATGGATGGTTTAAGGTTTGCACTTAGAAGAGGTGGTCGGTGTCTCATTGCTGATGAAATGGGACTTGGGAAGACACTTCAGGCTATTGCTATTGCAGGATGTTTTATGGATGAAGGATCTATACTTGTTGTTTGCCCTGCTGTTTTGCGATATTCATGGGCTGAAGAAATTGAGCGGTGGCTTCCTACCTGCTTGCCTACCGATATCCATCTCGTTTTTGGCCATCAAGACAATCCCGTATATCTAACAAGATGCCCTAAAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAGCATGCTTGAGCGTAAGTGGGCTCTTTTGATTGTTGATGAATCTCATCATGTACGCGCTACAAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAGAAATCGAGCGTATAATTCTGCTATCAGGGACACCTTCTTTATCAAGACCGTATGACATATTTCATCAGATAAATATGTTATGGCCAGGTTTGCTGGGGACAACAAAATATGAGTTTGCAAAAACTTATTGTGATCTCAAATATATCAAGGGTGTCCAAGGGAAAATTTTTGCGGATTACTCAAAGGGCATTCGCTTGGAGGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGGCTCAAGGAACATGTGTTGCAACAGTTACCTCCAAAACGCCGGCAAATTATAAAATTGTCGTTGAAGAGATCAGATATAGTTGCAGCGAAAACTGCAGTTGGGGCTTTGAAGATTGATGCCTCTGAAAATGCTTTGAAGATTGATGCCTCTGAAAATGCTAGTGAAGAGATGCCTTTGGAAAGTTTGGATGAACATGATGGAAAGCTTACTTATCAAGAACTTGGAATTGCAAAGCTATCTGGGTTTCGTGAATGGCTTTCGTTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAGATGATAATTTTTGGTCATCACCACAAAGTTCTTGACGGAGTACAGGAGTATATATGTGACAAAGGAGTAGGTTTTGTGCGAATAGATGGACATACACTACCCAGAGATAGACAATCCGCAGTAACCTCATTTCGATCATCACCGGAGGTTAAAATTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCGACAGCACGAGATGTTGTGTTTTTGGAGCTACCTCAGTGCCCAACAGTGATGCTTCAGGCTGAGGACAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAACATATACATATTCTGTGCAAAGGATACTTCAGATGAATCGCATTGGAAATATTTGAACAAAAGTTTGCACCGTGTTTCATCTACAACAGATGGCAAATATGATGCGGTGAAAGAGATAGAGGTTGAAGAAGTTTCTTCTTTAGGCCCATCCTTGAAAATTAACAGATCTAAAGAACAGTCTGCATTCAAAGATGCATCCGTTATAAGACAATTGGATGGGGAACTCTCTGCAGTGAAATCAAATGAAACAGCAACTAATCAAGATGATGACTCTGGTCTTTTAAACAACATAAATCAGGGTGCTAATATTATGGTTGATAGTGTTTCCTTCCTAGATTTAGACAAGGCTTCAGTTTTGGATGGAATTCGTGATGTAGATGTTTTTTATGCTGCGGATAGATGTCCTGAAGAGAGTTTCGAGGACAAAGATGAAGTAATAGAGGATAAGAAATCAACTTCAACAACAGATGCAGATGACGACCAGCCCAGTCATCCTGTTGAAACTGAAGTACATTGCTCTCATCAAGTTAATTCTTTGCGATTTGAGGTGAGCGCATACACCGGAAGGATCCACCTCTATACTTGCATTTTGGGTAAAGATGCAAGACCACAGCCACTTTATGAAAATTTCCGACCAGAGGACCTTGAGTTGCTGAGTCCTGCTGATGCTGATGAGAAACAGGGTATAGAGTTCACATCTGTCAAGGATAATCCCGCTTATAGGAATGCTCTTCTGGATTTTGCAAATGAGTGGAAGAATTTAAGGTCAATTGAACGCAATAAGTTACTTGGAAAACCATTACAACTTCCTTTGGATGTCGAATTGTGCTACTTAAGTGAAAGTAATAACCACAACAACAAGGGATTAATAAATGGTGGAAGCAAAAGGCGCATGACTCCTTTAGTGGACATCAGCTATCCCTTACCACCAGATGCTGTTTGGAAAAAGGTTTCCCTACGAAGTGGCCGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCCGGAAGATGAGCCTCTTTGTAAGCTTTGTCAAAAGCAATGCATGGGTAATAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGCTATCAAGAGTATCGCATGAGAACCAGCAACAGATTCCTCCGTCAGGAACTTTTCCAAATTGAGCAAGGTGTGTGCACAAATTGCCAATTGGACTGTCATAAGCTTGTGGTGCATATAAGACCTTTGTCCTTGGAAAGACGGCAAGCGTACATTGAAAAAGTAGCACCAAATATTGCAAAGCGGACGAAGATGCTTGAGAAGCTTGTCAAAGAACCAATTGAAGGCAATGCATGGCATGCTGATCACATTGTTCCAGTATACAAAGGCGGAGGTGAATGCAAACTTGAGAATATGAGAACTCTTTGTGTGGCCTGCCATCACGATGTTACTGCTGTACAATGTGCTGACCGACGTATTATAAGAGCAAATGCCCGGAAACAACTAAAAGAATTGATGAATACCATGAAAAATAGTATGAAGGGTGTTGCTGGAATTAATACTATTACTAAGGAACAATTGCTTTACGCAGAGCAAGAATATATGCACGAAGATGATGTTTTAGTCCCGGTTCCTGGAAGTGCCTATTCGCTAGCTAATAGTCAAGAAAGTGGAGATGTAGCCTGTAAGGATTAA 3516 0.4093 MVELTEQQKQQMEANRIAALAKRKAFLESNSQQPQRNPWHLFKCQKISQPKPEPEPDFKFLARLEICSHDSFTITPLPVPNFNFPTYDTCFAILNNILSRMDVDPSHFTQTSAGGKACVFKLTDYRSVLKLLKAEIKVEEIPWNTFNVVEKLSHLEGRWTPVRPEHLSDDEVDGLIRKLPKSLLDVLLPFQMDGLRFALRRGGRCLIADEMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRYSWAEEIERWLPTCLPTDIHLVFGHQDNPVYLTRCPKVVVISYTMLHRLRKSMLERKWALLIVDESHHVRATKKTSEPGEIKAVLDVASEIERIILLSGTPSLSRPYDIFHQINMLWPGLLGTTKYEFAKTYCDLKYIKGVQGKIFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIKLSLKRSDIVAAKTAVGALKIDASENALKIDASENASEEMPLESLDEHDGKLTYQELGIAKLSGFREWLSFHPLIAGSENASKMIIFGHHHKVLDGVQEYICDKGVGFVRIDGHTLPRDRQSAVTSFRSSPEVKIAIIGILAAGFGLDFSTARDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNIYIFCAKDTSDESHWKYLNKSLHRVSSTTDGKYDAVKEIEVEEVSSLGPSLKINRSKEQSAFKDASVIRQLDGELSAVKSNETATNQDDDSGLLNNINQGANIMVDSVSFLDLDKASVLDGIRDVDVFYAADRCPEESFEDKDEVIEDKKSTSTTDADDDQPSHPVETEVHCSHQVNSLRFEVSAYTGRIHLYTCILGKDARPQPLYENFRPEDLELLSPADADEKQGIEFTSVKDNPAYRNALLDFANEWKNLRSIERNKLLGKPLQLPLDVELCYLSESNNHNNKGLINGGSKRRMTPLVDISYPLPPDAVWKKVSLRSGRGKKEKEYTQGWSPEDEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYQEYRMRTSNRFLRQELFQIEQGVCTNCQLDCHKLVVHIRPLSLERRQAYIEKVAPNIAKRTKMLEKLVKEPIEGNAWHADHIVPVYKGGGECKLENMRTLCVACHHDVTAVQCADRRIIRANARKQLKELMNTMKNSMKGVAGINTITKEQLLYAEQEYMHEDDVLVPVPGSAYSLANSQESGDVACKD* 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4443 1171 CDD SF2_C_SNF 488 617 - -
Tpr3g4443 1171 Gene3D - 982 1118 - -
Tpr3g4443 1171 Gene3D - 166 406 IPR038718 -
Tpr3g4443 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 411 IPR027417 -
Tpr3g4443 1171 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 657 IPR027417 -
Tpr3g4443 1171 Gene3D - 413 691 IPR027417 -
Tpr3g4443 1171 MobiDBLite consensus disorder prediction 751 777 - -
Tpr3g4443 1171 Pfam HNH endonuclease 1053 1089 IPR002711 GO:0003676|GO:0004519
Tpr3g4443 1171 SMART helicmild6 523 606 IPR001650 -
Tpr3g4443 1171 Pfam SNF2-related domain 205 443 IPR000330 GO:0005524|GO:0140658
Tpr3g4443 1171 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 652 IPR001650 -
Tpr3g4443 1171 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 360 IPR014001 -
Tpr3g4443 1171 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 1114 - -
Tpr3g4443 1171 CDD HNHc 1051 1091 IPR003615 -
Tpr3g4443 1171 SMART ultradead3 183 379 IPR014001 -
Tpr3g4443 1171 CDD DEXHc_HARP_SMARCAL1 187 411 - -
Tpr3g4443 1171 Coils Coil 2 22 - -
Tpr3g4443 1171 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 5 1114 - -
Tpr3g4443 1171 Pfam Helicase conserved C-terminal domain 505 606 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4443 Tpr-Chr3 49479035 49495575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4443 511 624 RAD5 or RAD16-like Gene Family AT1G11100 36.842 7.29e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr3g4443 SNF2_N 2.2e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4443 K25861 - gmx:100788690 1723.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4443 3 49479035 49495575 Tpr3g4443 3 49479035 49495575 ECH