Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4434 ATGTCGGACGAGGAACATCACTTCGAGTCAAAGGCCGATGCCGGAGCTTCCAAGACTTATCCTCAACAAGCTGGAACCATCCGCAAAAACGGTTACATCGTTATCAAGAATCGTCCCTGCAAGGTTGTTGAAGTTTCAACCTCAAAGACCGGTAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAATTGATATTTTCACCGGCAAAAAGCTTGAAGATATCGTGCCCTCTTCCCACAATTGTGATGTTCCCCATGTGAATCGTACTGACTACCAATTGATTGATATTTCTGAGGATGGATTCGTGAGTCTGCTTACTGATAATGGAAACACCAAGGATGACCTGAAGCTTCCTACCGATGACAGTCTGCTTACCCAGATAAAGGATGGTTTTGCTGAGGGTAAGGACCTTGTTGTGTCTGTGATGTCTGCTATGGGTGAGGAGCAGATTAATGCCCTGAAGGATGTTGGTCCAAAGAACTAG 483 0.4576 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQINALKDVGPKN* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4434 160 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr3g4434 160 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr3g4434 160 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Tpr3g4434 160 Gene3D - 86 159 IPR012340 -
Tpr3g4434 160 TIGRFAM eIF_5A: translation elongation factor IF5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr3g4434 160 PANTHER BNAA07G09420D PROTEIN 1 157 - -
Tpr3g4434 160 MobiDBLite consensus disorder prediction 1 21 - -
Tpr3g4434 160 CDD S1_eIF5A 86 155 - -
Tpr3g4434 160 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Tpr3g4434 160 Gene3D - 1 85 IPR014722 -
Tpr3g4434 160 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Tpr3g4434 160 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Tpr3g4434 160 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4434 Tpr-Chr3 49405764 49408102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4434 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 91.824 3.02e-107 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4434 K03263 K02180 csin:114283100 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4434 3 49405764 49408102 Tpr3g4434 3 49405764 49408102 ECH