Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4424 ATGGAGAGAGAGGGATTTGATTTGAATAGAGGAACAAGTGGTGGGAATAATGGTAAGATTGGTGACGATTTTGTTGATAGAAGTAAAGTAAGGATTTTGCTTTGTGATACCGATTCAAATAGCTCTCAAGAGGTTTTTACACTTCTGTTAAGATGCTGTTATCAGGGTATGTATGTATTTATTTCAGTGAAATCAGCAAGACAAGTAATTGATGCACTGAATGCAGAGGGGGAACATATAGATCTCATACTAGCTGAAGTCGGTCTTCCGAAGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGGGACAAAGAATTGCGCAGAATTCCTGTGATAATGATGTCCGCGCAAGATGAGGTATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCGGACTATCTAGTAAAGCCTTTACGCACAAACGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCGCATGCTTGGACTTTCAGAGAAGAACATGTTAAATTATGACTTTGATCTGGTAGCATCAGAGCCTAGTGATGCCAATACAAATAGTACCACTTTGTTCTCTGATGACACTGATGATAGGTCCAAAAGAAACACTATTCCAGAGACAGAAATATCAGTCCAACAAGAGCAAGAGTCTACTATTGCAAATGCTGTTGCTGTCGAGGTACCTCCAGATGACCATGCATCAGAATGTCAGCCGGATGTCCATGGAATATATGATCAGCGAAAAGCACACTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATTGGGGTTGGGGAGTCATCAGCCTTCTTCACATATGTTAAATCATCAATGCTTAAGGGAAACCTTGAAGGGATTGTTCATGTTGATAACAATGCTCGCGAACATTTGAGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTTAGTAGTGACCTTGAAATACGTGAAAATGAAGACATGTGTGAAAGTCAATCGCAAGAAGACTTGCCTAGTAGCAATAGTATACCTGATTCTTTATCTATTGAGAGATCTTGTACTCCACCTGCATCCATGGAAGCTTCACGGCGAAACTGTTACAATGAAGAAAATTTGCATCACAACAATCTGATGCATCCAAGTAATGAGACTCGTTCTGAGCTTGAAATATCTGGCATGGCTGCACAACATGCATATCCATATTATATGCCAGGAGTTGTTAATCATGTTATGATGCCTTCATCGGCACAAATGTATCAAAAGAATGTCCAGGACTTGCAGAATCATGCTGCTACATCCATGATTGCCCACTACAATCATGTTCCACAAGTCGATCCTCATGGCACTGGTATGATGTTCCACCCGTATTACCCATCAAACATGTGCTTACAACCTGGTCAGATTCCTTCAGGTCATTCATGGCCATCCTTCGGAGGCTCAAGTTCATCCGAATCAAAATTAAGTAAAGTTGATAGGAGAGAGGCAGCGTTGATCAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAATCGAAAACAACTTGCTGAAAGACGGCCTCGAGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGCTAATGTGGATCTTAATGGAGAGCCTCCTTCCATTGAATATGATCAAGATGGTGAAGAAGATGACCTATGA 1665 0.412 MEREGFDLNRGTSGGNNGKIGDDFVDRSKVRILLCDTDSNSSQEVFTLLLRCCYQGMYVFISVKSARQVIDALNAEGEHIDLILAEVGLPKKKGMKMLKYIARDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLSEKNMLNYDFDLVASEPSDANTNSTTLFSDDTDDRSKRNTIPETEISVQQEQESTIANAVAVEVPPDDHASECQPDVHGIYDQRKAHFSSGPKKSELRIGVGESSAFFTYVKSSMLKGNLEGIVHVDNNAREHLRMEVMHQACAQQGVSSDLEIRENEDMCESQSQEDLPSSNSIPDSLSIERSCTPPASMEASRRNCYNEENLHHNNLMHPSNETRSELEISGMAAQHAYPYYMPGVVNHVMMPSSAQMYQKNVQDLQNHAATSMIAHYNHVPQVDPHGTGMMFHPYYPSNMCLQPGQIPSGHSWPSFGGSSSSESKLSKVDRREAALIKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGANVDLNGEPPSIEYDQDGEEDDL* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4424 554 ProSiteProfiles Response regulatory domain profile. 31 153 IPR001789 GO:0000160
Tpr3g4424 554 ProSiteProfiles CCT domain profile. 486 528 IPR010402 GO:0005515
Tpr3g4424 554 Pfam CCT motif 486 528 IPR010402 GO:0005515
Tpr3g4424 554 Gene3D - 30 238 - -
Tpr3g4424 554 SUPERFAMILY CheY-like 26 159 IPR011006 -
Tpr3g4424 554 MobiDBLite consensus disorder prediction 317 349 - -
Tpr3g4424 554 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 534 IPR045279 GO:0009736
Tpr3g4424 554 MobiDBLite consensus disorder prediction 531 554 - -
Tpr3g4424 554 Pfam Response regulator receiver domain 32 147 IPR001789 GO:0000160
Tpr3g4424 554 SMART REC_2 30 149 IPR001789 GO:0000160
Tpr3g4424 554 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 12 534 - -
Tpr3g4424 554 MobiDBLite consensus disorder prediction 325 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4424 Tpr-Chr3 49270958 49278218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4424 19 546 Response Regulator Gene Family AT5G61380 49.351 1.19e-170 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Tpr3g4424 Response_reg 1.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4424 K12127 - gmx:100271889 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4424 3 49270958 49278218 Tpr3g4424 3 49270958 49278218 ECH