Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4417 ATGGAAAATGTTTCAGTTATGTGTAAGGAAGAGGATCAAATGGATTTGCCACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTATTAGCCATTATCTTCTAAGAAAAGTAACTGACACAAACTTTTCTGCTAAGGCCATTGGAGAGGTTGATTTAAACAAATCTGAACCTTGGGATTTGCCATGGAAAGCAAAAATGGGTGAGAAAGAATGGTATTTTTTTTGTGTGAGAGATAGAAAGTATCCAACTGGTTTAAGGACTAATAGAGCAACTGAAGCTGGATATTGGAAAGCAACAGGAAAAGATAAGGAAATTTATAGAGGAAAATCTCTTGTTGGAATGAAGAAAACTCTTGTTTTCTATAAAGGAAGAGCACCTAAAGGAGAGAAAACTAATTGGGTGATGCATGAATATAGACTTGATGGTAAATTGTCTATTCATAATCTCCCTAAAACTGCAAAGCAGAATGAGTGGGTGATTTGCAGGGTATATCAGAAGAGTTTATCAAGCAAAAAGACATGTTTTTCTGGTGGGATAATGAGGTTAAACTCTTTTGGAAATGAACTTGGTTCTTCTATTCTTCCACCACTCACAGAATCCTCACCTTATTCCATTGACAAAATCAAATCACCTTACGTGTCCTGCTTCTCCAATCCAATTGAAAGAAACCAAGTTGGAATCTTTAATACCTTTAGCAACAACCCTTTTGAGGTTCATTCAAATCATTCAATTAATCTTCCAAAAAACACACTTTCTATTGGTTCGTTTTACTCTAATCAAGAGGTTCAAACCACACCAAATTTGCCATTATCTGGTTCTGTTTATAACAATGGATCAAACTTTGAGAATCAGCAGCACCTACCTGTTTCAACTGCACCAATAGATATATCTACCTTGTGGAATTATTAA 912 0.3564 MENVSVMCKEEDQMDLPPGFRFHPTDEELISHYLLRKVTDTNFSAKAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLDGKLSIHNLPKTAKQNEWVICRVYQKSLSSKKTCFSGGIMRLNSFGNELGSSILPPLTESSPYSIDKIKSPYVSCFSNPIERNQVGIFNTFSNNPFEVHSNHSINLPKNTLSIGSFYSNQEVQTTPNLPLSGSVYNNGSNFENQQHLPVSTAPIDISTLWNY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4417 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 278 - -
Tpr3g4417 303 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Tpr3g4417 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 278 - -
Tpr3g4417 303 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Tpr3g4417 303 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
Tpr3g4417 303 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4417 Tpr-Chr3 49230489 49232644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4417 14 303 NAC Transcription Factor Family AT5G07680 58.385 4.12e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr3g4417 NAM 3.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4417 - - gmx:100170719 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4417 3 49230489 49232644 Tpr3g4417 3 49230489 49232644 ECH