Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4411 ATGGCTCTTTTGGGTCTTCTCTTGGTTGGATTAGTTCTCTCTCTAGGATCTACTGTCTATGCATCAAATGATGGTTGGATTGATGCTCATGCTACCTTCTATGGAGGGGGTGATGCCTCTGGCACAATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGGTATGGGACTAACACAGCTGCTTTAAGCACTGCTTTGTTCAATAGTGGATTAAGTTGTGGAGCATGTTTTGAGATTAAGTGTGTTAATGATCAAAGATGGTGTCTTCCAAACTCAATTGTTGTCACCGCAACAAATTTTTGTCCACCAAACAACGCACTTCCAAATAATGCAGGTGGGTGGTGTAACCCTCCGCTTCACCATTTTGATCTCTCTCAACCTATCTTTCAACAAATTGCTCAATACAAAGCTGGAATTGTTCCAGTTGCATACAAAAGGGTCCCTTGCCAAAAGAAAGGAGGCATAAGATTCACAATCAATGGTCATTCATACTTTAACCTAGTACTAATTACCAACGTTGGAGGTGCTGGTGATGTTACTGCTGTTTCAATCAAAGGTTCAAAAACTAATTGGCAACCAATGTCCAGGAATTGGGGTCAAAATTGGCAAAGCAACTCTCACCTTGACGGACAAAGTCTCTCCTTCAAGGTCACTTCTAGCGATGGTCGGACTGTGGTCGCTAATAATGTTGCACCCGCTGGATGGTCCTTTGGTCAGACCTTCACCGGTATTCAGTTCTAA 747 0.4324 MALLGLLLVGLVLSLGSTVYASNDGWIDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIKCVNDQRWCLPNSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPIFQQIAQYKAGIVPVAYKRVPCQKKGGIRFTINGHSYFNLVLITNVGGAGDVTAVSIKGSKTNWQPMSRNWGQNWQSNSHLDGQSLSFKVTSSDGRTVVANNVAPAGWSFGQTFTGIQF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4411 248 Gene3D - 13 152 IPR036908 -
Tpr3g4411 248 Pfam Lytic transglycolase 61 146 IPR009009 -
Tpr3g4411 248 Gene3D - 154 248 IPR036749 -
Tpr3g4411 248 PANTHER EXPANSIN-A15 8 248 IPR002963 GO:0009664
Tpr3g4411 248 SUPERFAMILY PHL pollen allergen 153 245 IPR036749 -
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Tpr3g4411 248 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Tpr3g4411 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Tpr3g4411 248 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Tpr3g4411 248 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Tpr3g4411 248 PANTHER EXPANSIN 8 248 - -
Tpr3g4411 248 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Tpr3g4411 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Tpr3g4411 248 SMART dpbb_1 61 146 IPR007112 -
Tpr3g4411 248 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4411 Tpr-Chr3 49180476 49183014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4411 1 248 Expansin Gene Family AT2G03090 78.226 9.71e-149 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4411 - K20628 egr:104419919 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3151 6 34022002 34024097 Tpr3g4411 3 49180476 49183014 ECH
Tpr3g4411 3 49180476 49183014 Tpr3g4411 3 49180476 49183014 ECH
Tpr2g2000 2 23869791 23872231 Tpr3g4411 3 49180476 49183014 ECH