Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4402 ATGGAGAATATTGATCAACTCACGGTTTGGAAATATGATCATGCAATACAAGATTATGATCCATTTGCTCCTCCTTTGCCATTATCTTCATCATATGATGAAAATAATAATAATCTTTATAGAGGAAATGCAAGTGATTGGTCACATTATGGATTTCCCATGCTAGATACCAATTCTTATGTCCCTTTCAAGGATAATTATTTTCCTGAAATTCAATGTGAAACTGATCTTACTGAATTGCCAACACAAATAAGTGTAGAAGACTTTGATTTATATGATGCTAAAAATTTACTTCCAATGGGGAATGAAGTTGATGCTGGATTTTATGCTGAAAATAATGTGTTTTCTATAAGCAACAATATTGTAGAAAATAATGCAAAGGAAATTATGAAGGGTAAGCGTTGTAGAGAAGAGAATAGTGCAAGAATGTTAACAAGGAAGACAATTTCTGAGTACTTCTATATGCCAATTTCACAAGCTGCAAGAGAGCTTAATGTTGGTCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAACTAATGAGCCTTCAAACCCTCATTAAGAATGTTCAAGAGCAGGGTGATGAAAGTGATGAAAAAATAAGGAATGCTGTTGAAATATTGCAAAAAGAAATGAAGAAGGTAGAAGAAAAGCCAGATTTGCAACTTGAAGAAAACACAAAGAGGCTTAGACAAGCATGTTTCAAGGCCAATTACAAGAAGAGAAGGCTCATGGTCATGAGATTAATGGATCATCAACACTCTTCAATCAGTGAAATTGAAAGTGTTAATGATCACATAAGGGTTTAA 834 0.3393 MENIDQLTVWKYDHAIQDYDPFAPPLPLSSSYDENNNNLYRGNASDWSHYGFPMLDTNSYVPFKDNYFPEIQCETDLTELPTQISVEDFDLYDAKNLLPMGNEVDAGFYAENNVFSISNNIVENNAKEIMKGKRCREENSARMLTRKTISEYFYMPISQAARELNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGDESDEKIRNAVEILQKEMKKVEEKPDLQLEENTKRLRQACFKANYKKRRLMVMRLMDHQHSSISEIESVNDHIRV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4402 277 PANTHER PROTEIN RKD4 122 268 IPR044607 GO:0003700
Tpr3g4402 277 Coils Coil 206 226 - -
Tpr3g4402 277 Pfam RWP-RK domain 144 191 IPR003035 -
Tpr3g4402 277 ProSiteProfiles RWP-RK domain profile. 127 211 IPR003035 -
Tpr3g4402 277 PANTHER PROTEIN RKD1-RELATED 122 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4402 Tpr-Chr3 48950420 48952001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4402 34 251 AtRKD Transcription Factor Family AT1G18790 42.672 2.16e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tpr3g4402 RWP-RK 2.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4402 - - mtr:MTR_3g435550 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4402 3 48950420 48952001 Tpr3g4402 3 48950420 48952001 ECH