Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4399 ATGAAGAAGAGACAAGTTGTAGCTAAAACTTCATCTTCGATTACAAGAAATGTTAGATATGGAGAGTGTCAAAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTTGATGGTTGTAGAGAGTTCATGGCTAGCAATGGAGAAGGAACAAGTGGGGCTCTTACATGTGCTGCTTGTGGTTGTCATAGGAACTTTCATAGAAGAGAAGTGCAAACTGAAGTTGTTTGTGAGTACTCTCCACCTAATTATGGTCGCTAA 258 0.3992 MKKRQVVAKTSSSITRNVRYGECQKNHAANIGGYAVDGCREFMASNGEGTSGALTCAACGCHRNFHRREVQTEVVCEYSPPNYGR* 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4399 85 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 82 - -
Tpr3g4399 85 PANTHER MINI ZINC FINGER PROTEIN 3 2 82 - -
Tpr3g4399 85 Pfam ZF-HD protein dimerisation region 17 70 IPR006456 -
Tpr3g4399 85 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
Tpr3g4399 85 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4399 Tpr-Chr3 48920876 48921399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4399 1 82 Zinc finger-homeobox gene family AT1G18835 77.273 1.34e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tpr3g4399 ZF-HD_dimer 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4399 - - gmx:100785967 161.77