Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4398 ATGATGGGGAGACCACCTTGCTGTGAGAAAATTGGTGTTAAGAAAGGACCTTGGACTCCAGAAGAGGATATCATTTTGGTCTCTTATATTCAAGAACATGGACCTGGGAATTGGAGATCTGTTCCCAACAGGTCAGGTTTGATGAGATGTAGTAAGAGTTGCCGACTTAGATGGACCAATTATCTTAGACCAGGAATCAAAAGAGGTAACTTCAATGATCATGAAGAAAAAATGATAATCCATCTTCAAGCACTTTTGGGAAATAGATGGGCAGCCATAGCTTCTTATCTTCCACAAAGGACAGACAATGACATAAAAAACTATTGGAATACACATTTGAGGAAAAAGCTAAAGAAGGTTCAAATTCAAACAGGTAATGATAATGAAAAAGAAGAAAACACTTCTCCACAAGTTAAAGGACAATGGGAAAGAAGGCTTCAAACAGATATTCATATGGCAAAACAAGCTTTATGTGAAGCACTTTCACTTAACACTCCAAAACCTATTTTACTAGCTGAAACAAACCTAACAACAGAAAACAAAACATCTCCTTATGCATCAAACACTGAAAACATAGCTAGATTGCTAGAAAAGTGGATGAAGAAACCCGAAAACTCGGACGAGGTGGTAACCACCGGTTCAAGTTCTAGTGAAGGAGGACAGAAAAGTCAAGCTTTTGATTCTTTGTTGAGCTTTAATTCTTTTAATTCTGTGTCAGTTGAAGATAACATCAACTTGACAATGGATTCTTGCCTCTTTCAATATGAAAGTAAGCCAAACCTAGATTCTCAAGTTCCTTTCATGTTCTTGGAGAAGTGGCTTTTTGATGATGGTGCTCCTCAATGCAATGAAGAAGATCTAATCAACATATCAATGGAGGAGAATTCAGTAGGGTTGTTTTTTAGTAAATAG 912 0.3706 MMGRPPCCEKIGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPNRSGLMRCSKSCRLRWTNYLRPGIKRGNFNDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKVQIQTGNDNEKEENTSPQVKGQWERRLQTDIHMAKQALCEALSLNTPKPILLAETNLTTENKTSPYASNTENIARLLEKWMKKPENSDEVVTTGSSSSEGGQKSQAFDSLLSFNSFNSVSVEDNINLTMDSCLFQYESKPNLDSQVPFMFLEKWLFDDGAPQCNEEDLINISMEENSVGLFFSK* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4398 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tpr3g4398 303 MobiDBLite consensus disorder prediction 120 141 - -
Tpr3g4398 303 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tpr3g4398 303 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tpr3g4398 303 SMART sant 14 64 IPR001005 -
Tpr3g4398 303 SMART sant 67 115 IPR001005 -
Tpr3g4398 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Tpr3g4398 303 Gene3D - 70 139 - -
Tpr3g4398 303 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tpr3g4398 303 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tpr3g4398 303 CDD SANT 70 113 IPR001005 -
Tpr3g4398 303 Gene3D - 14 67 - -
Tpr3g4398 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 288 - -
Tpr3g4398 303 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 288 - -
Tpr3g4398 303 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr3g4398 303 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4398 Tpr-Chr3 48897037 48899965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4398 2 277 MYB Transcription Factor Family AT5G62470 52.924 8.61e-106 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4398 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4398 K09422 - gmx:100807020 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4398 3 48897037 48899965 Tpr3g4398 3 48897037 48899965 ECH