Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4390 ATGGATTCTCTCAAAATTTTCAAAGGCTACGACAAAGTTGAAGACAACCTCGAAGATCCACAAAAACAACAAGAACAGCACCGACACAAAATCTCCAAACCCCTCATCGCCACAATTTCCATCATCGTCACCATCCTCTTCCTTACCTTCACTCTATCTTTCACTCTTTTCTACCACCACAACAACTCAACCGAGTCACAAAACCCCCTCAACTCACTCAACTCAACCGAGTTAATCCGATCCGTTTGCAACGTAACTCGCTTCCCTGACTCATGTTTCACCGCTATATCATCCTCCACACAAAACCCCACCGACCCAAAAACCATACTCAAAATCTCAATCCTCGCATCCATTAACGAACTTAACAAATTCGCTTCATCACTAAAAGCTAACTCCAGTGGACATACGCTCGGTGATTGCAATGAACTGATTGATGACGCGGTGAGTCGACTCAACGATTCTGTTTCAGTATTTTCTGATGACGCCGTAACGTTGACGGATGTTAAAATTAACGATATTCAGACGTGGGTTAGTGCCGCGTTGACGGATCAACAAACGTGTGTTGATGGGTTAGAAGAAGTTGGGTTTTCGTTGGTTGAAAAGGTAAAGAAAATTATGCAAAAATCATATGAGTATATTAGCAACAGTTTAGCTATTGTTGCTAATATACGCAATTTGGTAAATGTGCCACTTCATTGA 699 0.4177 MDSLKIFKGYDKVEDNLEDPQKQQEQHRHKISKPLIATISIIVTILFLTFTLSFTLFYHHNNSTESQNPLNSLNSTELIRSVCNVTRFPDSCFTAISSSTQNPTDPKTILKISILASINELNKFASSLKANSSGHTLGDCNELIDDAVSRLNDSVSVFSDDAVTLTDVKINDIQTWVSAALTDQQTCVDGLEEVGFSLVEKVKKIMQKSYEYISNSLAIVANIRNLVNVPLH* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4390 232 PANTHER PECTINESTERASE 1-LIKE 3 224 - -
Tpr3g4390 232 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 223 IPR035513 -
Tpr3g4390 232 TIGRFAM PME_inhib: pectinesterase inhibitor domain 45 222 IPR006501 GO:0004857
Tpr3g4390 232 CDD PMEI-like_3 81 223 - -
Tpr3g4390 232 SMART PMEI_2 74 219 IPR006501 GO:0004857
Tpr3g4390 232 Pfam Plant invertase/pectin methylesterase inhibitor 78 219 IPR006501 GO:0004857
Tpr3g4390 232 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 225 IPR035513 -
Tpr3g4390 232 PANTHER PECTINESTERASE 3 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4390 Tpr-Chr3 48825841 48826861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4390 1 232 Carbohydrate Esterase AT1G53840 32.411 9.96e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4390 - - gmx:100789567 198.364