Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4389 ATGTCTAGTAGGAGGTCACGGTCAAGGCAAACAAGTAGTTCAAGGAATATCACTGATGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAACCGGAGCTCCGACAAGGTTTCAGCTTCGAGGACATTGCAGGAAACTTGCAACTATATTAGAAACTTGCACAGAGAAGTGGACGATCTAAGCGAGCGTTTGTCTGAGCTATTAGCTACAACAGACACAGCACAAGCAGCAATAATTAGAAATTTACTTATGCAATAG 279 0.4301 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRTLQETCNYIRNLHREVDDLSERLSELLATTDTAQAAIIRNLLMQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4389 92 Coils Coil 57 77 - -
Tpr3g4389 92 Gene3D - 18 88 IPR036638 GO:0046983
Tpr3g4389 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Tpr3g4389 92 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tpr3g4389 92 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g4389 92 Pfam Helix-loop-helix DNA-binding domain 20 60 IPR011598 GO:0046983
Tpr3g4389 92 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
Tpr3g4389 92 CDD bHLH_AtPRE_like 17 77 - -
Tpr3g4389 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4389 Tpr-Chr3 48815000 48817066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4389 1 92 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 72.043 4.12e-39 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g4389 HLH 3.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4389 - - gmx:100527636 153.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3168 6 34241381 34242890 Tpr3g4389 3 48815000 48817066 ECH
Tpr2g0357 2 4282403 4286134 Tpr3g4389 3 48815000 48817066 ECH
Tpr2g1926 2 23111487 23113157 Tpr3g4389 3 48815000 48817066 ECH
Tpr7g1232 7 12712876 12714696 Tpr3g4389 3 48815000 48817066 ECH
Tpr3g4389 3 48815000 48817066 Tpr3g4389 3 48815000 48817066 ECH