Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4388 ATGAGAAATGGAAGAAACAGACCCAACGAACCTGCCAGCTTCTCCACTCAAGCAAACGCACTTCTTAGGAAGAACTTAACCTTTCAGAGACGAAATGTGAAGACAAACTTTAGGCTGATCTTGTCACCATTTTTTCTGTGTATATTGCTGGCTTTACTTCAAACTTTGCTCAATAAACAATTTGATAAGGCCTCAAATAAGTGTGGATGCATTTGTACCAAGACACAAGGGGAACAATGCCTGGAGAAACAATGTGGGGTTCAATATTCGGATTTTGACCAAGTTGGCACTTGTCTTATTACTAACCCTCCTGAATGGCCTCCATTATTGCAAACTCCTGATCCACAATACCGCGCTGTTAGAACAGATTTTCTTCCGTATTCTGATTTTCCAAACCCCTTATGCAGAAACAATGGCTCATGTCCACTCACTATGCTCTTTACTGGCACTAATCAGTCTTTCGGAGAAGTCTTGTCAGGGAATATGATCCCAAGTACTTTTGGCATAAACAACGCGGATGTTATGGATAGTTTGGCGACAAATGTCTTGGGATCAGCATCAGAGACAGAAAACACCAATTTTCTGGAGCCTGCTTTCTTTTCAGATCTTCCTATTTACTATCTACAAAGTCAATGCGGAAAGAACTCTACATTCTCCATTCCTATTCAGATATCAACCACTAGCAGGCAGCAAGAGTTAAGATGTGCTCAGGTTTTACGTTTATGGCGCAATAGTTCTTCTGAGGTAAACAATGAGCTATATAAAGGTTATAGAAAAGGTAACACGGAGAGGAAGATCAATGAGATTGTCGCAGGTTATGATTTTCTAAATTCAAATGAGAATATATTTAATGTCAGTATATGGTACAACGCAACTTATAAAAATGACACTGGCTTTGATACTATTGCATTGGCACGGATTCCTCGTTCAGTTAATTTGGTATCAGATGCCTACCTTCAGTTTCTGTTGGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCAAAATTAAGTTTGATTTGGCTTCTCTTTTGGGTGCTCTCTTCTTTACATGGGTCATCCTGCAACTTTTCCCTGTTGCCCTCACATCATTAGTTTATGAGAAGCAACAAAATTTAAGAATTATGATGAAAATGCACGGTCTCGGTGATGGCCCATATTGGATGATTTCTTATGGTTATTTTCTTGCCATATCAGTTATCTACATGCTGTGTTTTGTGATATTTGGCTCAGTCATAGGATTAAAATTCTTCACAATGAACGACTACAGCATCCAATTCATTTTTTATTTCATCTATATAAATTTACAAATTTCACTGGCATTTTTATTGGCCTCCCTATTTTCAAATGTCAAGACCGCTACAGTGATTGCATATATAGGTGTTTTTGGAACTGGGCTATTAGCTGGTTTTCTTTTCCAATTTTTTGTTCAAGATACATCCTTTCCAAACGGGTGGATCATTGTTATGGAGTTATATCCCGGATTTGCTTTATATCGTGGGCTATATGAATTTTCACAAGCTTCTTTTAGTGGAGATACTTTGGGGACTCGTGGTATGCGGTGGGGAGATCTCAGTGATAGCACAAATGGCATGAAAGAGGTCTTGATTATCATGTATGTGGAGTGGCTATTGGTTCTATTCTCTGCTTATTACGTCGATCAAGTTTTGTCAACAGGAAGTTGGAAAAGTCCTCTTCTGTTCTTGAAAAGATTTCAGAAAAATCCTAGTTCATCTTTTCGGAAGCCTAGTATCCAAAGACAAGGATCTAAAGTTTTTGTTACAACTGAGAAACCAGATATTCATCAAGAGACGGAGAAGGTGGAGCAGCTGCTACTTGAACCGACTATGAATCATGCAATTGTTTGTGACAAACTGAGAAAAGTTTATCCAGGGAGGGATGGCAACCCAGAGAAATTTGCGGTGAGAGAGTTGTCGCTTGCTTTGCCTCAAGGGGAGTGCTTTGGCATGCTTGGTCCCAACGGTGCTGGGAAGACTTCTTTTATCAACATGATGATAGGTCTTACGCAGCCAACCTCAGGTACAGCATTTGTTCAAGGTCTTGACATAAGAACTAATATGAATGGAATATATACTAGCATGGGTGTATGCCCACAGAATGACTTGCTGTGGGAAATCTTGACAGGAAGAGAGCACTTGCTCTTTTATGGTAGACTTAAAAATCTTAAAGGTTCTGACTTAACACAAGCAGTGGAAGAATCTTTGAAAAGCGTAAACCTTTTTCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATATAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATATCGTTGATCGGAGATCCTAGAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCATCAAGAAAGAACTTATGGAATGTTGTTAATCGTGCAAAACAAGACCGTGCAATCATTCTTACTACACATTCTATGGAAGAGGCGGAAGTACTTTGTGATCGATTAGGAATATTTGTAGAAGGTAGCTTTCAGTGCATAGGAAATCCAAAGGAGCTGAAAGGAAGATATGGAGGAACTTATGTGTTCTCAATGGCAACATCTATTGATCATGAAACTGATGTTGAGAAATTGGTGCAACAACTCTCACCAAATGCTAAGAAGATTTACCATATCTCTGGTACACAAAAGTTTGAGCTGCCAAAAGATGAGGTTAAAATAGCTAATGTATTCCAAGCTGTTGAAACTGCAAAAGGAAACTTCCCAGTTTCTGCATGGGGTTTAGCTGACACTACATTGGAAGATGTCTTCATTAAGGTTGCTCGTGAGGCTCAGCCATATGATACTTTGTCATAA 2853 0.3929 MRNGRNRPNEPASFSTQANALLRKNLTFQRRNVKTNFRLILSPFFLCILLALLQTLLNKQFDKASNKCGCICTKTQGEQCLEKQCGVQYSDFDQVGTCLITNPPEWPPLLQTPDPQYRAVRTDFLPYSDFPNPLCRNNGSCPLTMLFTGTNQSFGEVLSGNMIPSTFGINNADVMDSLATNVLGSASETENTNFLEPAFFSDLPIYYLQSQCGKNSTFSIPIQISTTSRQQELRCAQVLRLWRNSSSEVNNELYKGYRKGNTERKINEIVAGYDFLNSNENIFNVSIWYNATYKNDTGFDTIALARIPRSVNLVSDAYLQFLLGPGTKMLFEFVKEMPKPETKIKFDLASLLGALFFTWVILQLFPVALTSLVYEKQQNLRIMMKMHGLGDGPYWMISYGYFLAISVIYMLCFVIFGSVIGLKFFTMNDYSIQFIFYFIYINLQISLAFLLASLFSNVKTATVIAYIGVFGTGLLAGFLFQFFVQDTSFPNGWIIVMELYPGFALYRGLYEFSQASFSGDTLGTRGMRWGDLSDSTNGMKEVLIIMYVEWLLVLFSAYYVDQVLSTGSWKSPLLFLKRFQKNPSSSFRKPSIQRQGSKVFVTTEKPDIHQETEKVEQLLLEPTMNHAIVCDKLRKVYPGRDGNPEKFAVRELSLALPQGECFGMLGPNGAGKTSFINMMIGLTQPTSGTAFVQGLDIRTNMNGIYTSMGVCPQNDLLWEILTGREHLLFYGRLKNLKGSDLTQAVEESLKSVNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPRVVYMDEPSTGLDPASRKNLWNVVNRAKQDRAIILTTHSMEEAEVLCDRLGIFVEGSFQCIGNPKELKGRYGGTYVFSMATSIDHETDVEKLVQQLSPNAKKIYHISGTQKFELPKDEVKIANVFQAVETAKGNFPVSAWGLADTTLEDVFIKVAREAQPYDTLS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4388 950 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 11 950 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tpr3g4388 950 SMART AAA_5 658 841 IPR003593 -
Tpr3g4388 950 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 628 865 IPR003439 GO:0005524
Tpr3g4388 950 Pfam ABC-2 family transporter protein 349 553 - -
Tpr3g4388 950 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 11 950 - -
Tpr3g4388 950 ProSitePatterns ABC transporters family signature. 767 781 IPR017871 GO:0005524
Tpr3g4388 950 Pfam ABC transporter 650 794 IPR003439 GO:0005524
Tpr3g4388 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 856 IPR027417 -
Tpr3g4388 950 CDD ABC_subfamily_A 632 853 - -
Tpr3g4388 950 Gene3D - 619 894 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4388 Tpr-Chr3 48804210 48811692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4388 551 872 Calmodulin-binding Proteins AT2G36910 22.515 2.87e-13 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4388 3 48804210 48811692 Tpr3g4388 3 48804210 48811692 ECH