Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4382 ATGTCAAGGAGAGCAACACACTGGTGTCATACATGTAGACAGCCAATCCTGCTTGCAGGGAGGGATGCTCTTTGCCCTTACTGCGAGGGAGGATTTGTGCAAGAAATTAATGAGTTGCGAAGACTTGCATCGTCGTCACAGATGGAAGAGTTTCAGGACGATGCTGATATTTTCGACGCAATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAATTGGATTTAGAGATGCTGTTGATAGTTACATGAGGCAAAGAAGGGATGGTAGAAACACAAACTTTGATGTCAGAAGAAGGTCTGTGTCTGGTTCTGTTCCTATTCCGGAACAAACTTGGGGTGTTTTTAGTTCTGGCGGTCGTTACTTAATATTTCATGGTCAAACACCTAACTCAAGAGGCGATCCTAGGCACGTTGATTTTGGCGAGTACTTTATGGATACTGGACTTGATGAACTTATTGAACAACTCAATACGAACGGTCGTGGTCCAGCCCCGGCCTCACGATCTTCGATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATGTTCACTCTGATTCACACTGTCCAATTTGTATAGAAAGGTTTGAACTTGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATTTACCACTCGGATTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTAATGGACGTGGTAGTTCTCGTGGTAGTAGAAATTGGGGAAGAAGGAATGACAATAGTACTGGTCAAAACAATAATGGCCGAGGAAGGAGAAATCCATTGTCGTTTTTGTGGCCATTTCGTTCTTCCAGTTCAAATACTAATCACTGA 858 0.4336 MSRRATHWCHTCRQPILLAGRDALCPYCEGGFVQEINELRRLASSSQMEEFQDDADIFDAIHAVVSQRGSVPRIGFRDAVDSYMRQRRDGRNTNFDVRRRSVSGSVPIPEQTWGVFSSGGRYLIFHGQTPNSRGDPRHVDFGEYFMDTGLDELIEQLNTNGRGPAPASRSSIEAMPTIKITQAHVHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPNGRGSSRGSRNWGRRNDNSTGQNNNGRGRRNPLSFLWPFRSSSSNTNH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4382 285 SMART ring_2 191 231 IPR001841 -
Tpr3g4382 285 CDD RING-H2_RNF126_like 191 232 - -
Tpr3g4382 285 SUPERFAMILY RING/U-box 171 238 - -
Tpr3g4382 285 MobiDBLite consensus disorder prediction 241 268 - -
Tpr3g4382 285 Pfam Ring finger domain 190 232 IPR001841 -
Tpr3g4382 285 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Tpr3g4382 285 MobiDBLite consensus disorder prediction 239 268 - -
Tpr3g4382 285 PANTHER OS03G0351800 PROTEIN 1 285 - -
Tpr3g4382 285 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Tpr3g4382 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 238 IPR013083 -
Tpr3g4382 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4382 Tpr-Chr3 48752908 48755200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4382 136 248 C3H Transcription Factor Family AT5G01980 41.379 2.16e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4382 K11982 - cam:101496968 449.899