Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4378 ATGATGATGAAGAAGAAGCAAGAAGTTATTGTTCAAAAATCACACAAGTGCAATATTTGTGGCAAGTGTTTTAGCAATGGAAAAGCATTAGGTGGTCACAGAAGATCTCACTTTCTTAAGAAAAAACCTAATCTTCAAAAATCACCAGAGCTGAAAACCCCTAGTAAGACAATTAGGGTTAGGTTTTTCAATGATGATGAAGATATTGATTGCAAAAAGAATCAAATTACTCGTTGTTATATTTGCAATAAGAAATTTCCAACAAAGAATGCTTTGTATGGTCACATGAGATCTCATCCTGATAGGGTTTGTAAAGGAGTCAGCCGACCTTCAAATTATGATATTCAAAACTCTTCTTCTTCCAATAATTCCGATAAAAGAGAAGATCGAGATGATGATGATGATGACGATGGTGGTGATGGTAATTTTTCTTTGCCAAAATGGAAAAAGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGCCGAGGCGGCTACAAACCTATTGTATCTTCGATCTGATACACACAACTGTGAGGTTTCAGGTTTGAACTCAAAGAATTCTGAATTTCCACTTCCAATTAAAAAAAGGGATTTTTTTATTGGTGAGTCATCATCAAATGGGAATGGTAAGAAAGAGTTTGTGGTGAACAAGATTAAAGTTGTTTTTGGTGGTTCATTGAAGATTGAAAACAAAAGTGATTGGAATGGTGATGATGATCATGATCATGATCATGATGAGAAGAAACTAATGGCAAGTGAAGGTTTATGTGAATCTAGGGTTGATGAGAAACCGAGTAATCTTTCTGAAGAACAAAAAAAATTCAACTTTGATTTGAATGAGCCATATGTTATGGAAGACTAA 864 0.3426 MMMKKKQEVIVQKSHKCNICGKCFSNGKALGGHRRSHFLKKKPNLQKSPELKTPSKTIRVRFFNDDEDIDCKKNQITRCYICNKKFPTKNALYGHMRSHPDRVCKGVSRPSNYDIQNSSSSNNSDKREDRDDDDDDDGGDGNFSLPKWKKRDKRGRKCIGSAEAATNLLYLRSDTHNCEVSGLNSKNSEFPLPIKKRDFFIGESSSNGNGKKEFVVNKIKVVFGGSLKIENKSDWNGDDDHDHDHDEKKLMASEGLCESRVDEKPSNLSEEQKKFNFDLNEPYVMED* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4378 287 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 15 159 IPR044653 GO:0003700
Tpr3g4378 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Tpr3g4378 287 SMART c2h2final6 77 99 IPR013087 -
Tpr3g4378 287 SMART c2h2final6 15 37 IPR013087 -
Tpr3g4378 287 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Tpr3g4378 287 PANTHER ZINC FINGER PROTEIN ZAT4-LIKE 15 159 - -
Tpr3g4378 287 MobiDBLite consensus disorder prediction 234 274 - -
Tpr3g4378 287 Gene3D Classic Zinc Finger 55 138 - -
Tpr3g4378 287 SUPERFAMILY beta-beta-alpha zinc fingers 13 99 IPR036236 -
Tpr3g4378 287 MobiDBLite consensus disorder prediction 107 146 - -
Tpr3g4378 287 Pfam C2H2-type zinc finger 15 37 - -
Tpr3g4378 287 Pfam C2H2-type zinc finger 77 101 - -
Tpr3g4378 287 Gene3D Classic Zinc Finger 8 38 - -
Tpr3g4378 287 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Tpr3g4378 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 42 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4378 Tpr-Chr3 48718670 48719533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4378 12 110 C2H2 Transcription Factor Family AT2G26940 37.383 6.65e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g4378 zf-C2H2_6 9e-06 CL0361