Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4374 ATGTTTATTCCATTTCTGTTTTGCTATTTCACAGATGACAACAAATATAAAGGGGGGGGCATATATATGGTCTTTGAATATATGGACCATGACTTAACAGGTCTTGCAGACCGGCCTGGCATGAGATTTACCATCCCCCAAATTAAGTGTTACATGAGGCAGCTTTTGACGGGACTGCACTATTGTCATGTCAATCAAGTTCTTCATCGTGATATCAAAGGCTCAAATCTTCTCATAGATAATGAAGGTAATCTGAAGCTGGCAGATTTTGGATTGGCTCGGTCATTTTCGAATGAGCACAATGCAAACCTTACAAATCGAGTCATCACATTATGGTACAGACCCCCTGAATTACTACTGGGGGCAACAAGGTATGGGCCAGCTGTAGACATGTGGTCTGTTGGTTGCATTTTCGCTGAGCTTCTTCAAGGCCACGGGAAGCCAATCTTTCCTGGAAAAGACGAGCTTGAGCAATTAAATATGATTTTTGAGCTGTGCGGAGAACCAGATGAGGTGAACTGGCCCGGAGTTCAAAACACTCCTTTGTACAATCAGTTGAAGCCGACAAGACCGATGAAAAGGCGTCTGAGGGAAGTTTTCAGACATTTCGATCACCATGCGTTGGAGTTGTTGGAGAAGATGCTCACACTTGATCCTGCTCAGAGAATTCTTGCCAAGGACGCACTTGATGCCGAGTATTTCTGGACTGATCCATTACCATGTGCTCCCACTAGGCTGCCATACATGAGAAGAACTAGCTGTTTCAATTGTACCATGAAGAATGAAAATATCAACTTACTTAGTTCTACTTGGAAAAGACGGATTTTGTGTCTGAATTGCTTGAAGAAATCCACTACAACGAACATGCACACACAGACAAAATGA 885 0.4294 MFIPFLFCYFTDDNKYKGGGIYMVFEYMDHDLTGLADRPGMRFTIPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGATRYGPAVDMWSVGCIFAELLQGHGKPIFPGKDELEQLNMIFELCGEPDEVNWPGVQNTPLYNQLKPTRPMKRRLREVFRHFDHHALELLEKMLTLDPAQRILAKDALDAEYFWTDPLPCAPTRLPYMRRTSCFNCTMKNENINLLSSTWKRRILCLNCLKKSTTTNMHTQTK* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4374 294 PANTHER CYCLIN-DEPENDENT KINASE C-2 13 262 - -
Tpr3g4374 294 CDD STKc_CDK9_like 19 234 - -
Tpr3g4374 294 Gene3D Phosphorylase Kinase; domain 1 17 27 - -
Tpr3g4374 294 SMART serkin_6 2 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4374 294 SUPERFAMILY Protein kinase-like (PK-like) 9 241 IPR011009 -
Tpr3g4374 294 PANTHER CELL DIVISION PROTEIN KINASE 13 262 - -
Tpr3g4374 294 ProSiteProfiles Protein kinase domain profile. 1 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4374 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Tpr3g4374 294 Pfam Protein kinase domain 20 234 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4374 294 Gene3D Transferase(Phosphotransferase) domain 1 28 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4374 Tpr-Chr3 48690916 48693148 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4374 12 276 Core Cell Cycle Gene Families AT5G64960 75.472 1.80e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Tpr3g4374 Pkinase 2.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4374 K08819 - gmx:100793565 450.284