Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4373 ATGGGAAGTTCTTGTACAAAACCAGTTGCTCATGTTTCTTCATCAAACATTTCTGGAAGTAAGAAGCCTGAAAGCACAGCAAAGCGGTATTCAAATTCTTCCGAACAAAGAGCTTCTTTCCAAACTTCACAGGAAAATGTGGAAAATTCGATCTCCAGTAAACTTAAGTCCTTCAGCTTGAATGATATGAAGGAGGCTACTAAGAACTTTCGCCGAGAAAATATAATCGGAGAGGGAGGGTTTGGGCGTATCTTCAAGGGATGGATTGATGAAAACACATTTGCTCCCACAAAACCAGGGACTGGAATTGTAGTGGCCATTAAGAATCTCAAACCAGAAAGCTTTCAAGGCCACAAAGAATGGCTGGCAGAAGTAAATTATCTAGGGCAGCTTCACCATGAAAATCTCGTGAAACTCATTGGTTTTTGCTTACAAGGAAAAAACAGGCTTCTAGTTTATGAGTTCATGCAAAAAGGAAGTTTGGAAAATCACTTATTCAGAAAAAATGTTCAACCTATTCCCTGGCCTACACGTATCAACATAGCTGTTGGTATTGCAAAAGGATTAACATTCTTACATTCCTTGAATGCAAATGTTATCTTTCGTGATTTAAAGGCGTCTAATATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGATTTTGGATTGGCAAGAGATGGTCCTACCGGAGATAATACTCATGTTTCAACTAGAGTCATCGGAACTCAAGGTTATGCTGCTCCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGCGTTGTCTTGTTAGAATTACTAACAGGAAAGCGTGCGGTAGAGGACACCAGACCTGGACTTTCTGAAGAAACTCTTGTGGATTGGGCAATGCCTTTCTTGAGTGATTCCAGAAGAGTTTTGAGAATCATGGATACAAGATTAGGTGGTCAATACTCTAAGAAAGGAGCACAAGCTACAGCTGCACTTGCATTGCAATGCCTAAACACGGATCCTAAATTTAGACCACCAATGGCAGAAGTTCTTGCAACATTGCAAGGACTTCAATCATCTAATTCATTCCAAAGAACACCAAAACATGGAAATGAGAATTCTGCAATCAAACATTCTTCTCATTCCGTAAGGTGA 1146 0.4005 MGSSCTKPVAHVSSSNISGSKKPESTAKRYSNSSEQRASFQTSQENVENSISSKLKSFSLNDMKEATKNFRRENIIGEGGFGRIFKGWIDENTFAPTKPGTGIVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGFCLQGKNRLLVYEFMQKGSLENHLFRKNVQPIPWPTRINIAVGIAKGLTFLHSLNANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGKRAVEDTRPGLSEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGAQATAALALQCLNTDPKFRPPMAEVLATLQGLQSSNSFQRTPKHGNENSAIKHSSHSVR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4373 381 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4373 381 MobiDBLite consensus disorder prediction 359 381 - -
Tpr3g4373 381 Gene3D Phosphorylase Kinase; domain 1 42 155 - -
Tpr3g4373 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Tpr3g4373 381 PANTHER TYROSINE KINASE FAMILY PROTEIN 18 378 - -
Tpr3g4373 381 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Tpr3g4373 381 SUPERFAMILY Protein kinase-like (PK-like) 45 357 IPR011009 -
Tpr3g4373 381 MobiDBLite consensus disorder prediction 1 46 - -
Tpr3g4373 381 CDD STKc_IRAK 76 354 - -
Tpr3g4373 381 PANTHER OS01G0588500 PROTEIN-RELATED 18 378 - -
Tpr3g4373 381 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Tpr3g4373 381 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4373 Tpr-Chr3 48687174 48690583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4373 14 351 Glycoside Hydrolase AT3G07070 46.921 3.60e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr3g4373 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4373 - - gmx:100800654 630.172