Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4363 ATGGTTAGGTCTGCAAGTTGTGAAAAAACCAGTGTCGTCAAAAGCGGTGTATGGATCGCAGAAGACGATGCAAAGACACCTACGTTTGTATCGGAGCATGGTTCTAGTAATTGGACTTCTGTCCCCAAAAAAACAGGTGTTAAGAGGTGTGGAAAAAGTTGCAGGCTTAGGTTAAGTAGCTACATACCTGATCTTAAGCATGATAACTTTACATCAGAAGAAGAAGATTTAATCGTTAAGCTTCACGCGGCCATCGGTAGTAGGTGGTCTATAATAGCTCAACAACTACCTGGAAGAACAGACAATGATGTAAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGATCCTGTTACTCACAAACCTTTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGCTACTACTACTGCTACTGATTCACAACAAAGATTGATCAGAAACACAAACGACCGATCAATGCAATTGCGAACGAAAATGGAAACATCGATGTTTGAGGAAGGATGTTTGTCATCAACACTATCTACCTCATCTGCTTGTTCTTCAACTTCAACACAAGGAACAACATTTGTTGCACCGTTTAGTTGGAATGATTTTCTTACAGAAGATGCTAATTTTGCAGCACCTACTAATAACCTGCAAGAAGAACAATATTTAGAGAAAAAGAAAGAGGTTATGTCATCATCCTCAGATGTTTCATTTGTTGAAGCCATACTTGATCAAGAAAATGAGATGTTTCTAAGCTTTCCTGAACTTTTAGAGGAACCATCCAATTACTGA 801 0.3833 MVRSASCEKTSVVKSGVWIAEDDAKTPTFVSEHGSSNWTSVPKKTGVKRCGKSCRLRLSSYIPDLKHDNFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGATTTATDSQQRLIRNTNDRSMQLRTKMETSMFEEGCLSSTLSTSSACSSTSTQGTTFVAPFSWNDFLTEDANFAAPTNNLQEEQYLEKKKEVMSSSSDVSFVEAILDQENEMFLSFPELLEEPSNY* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4363 266 CDD SANT 18 57 IPR001005 -
Tpr3g4363 266 SMART sant 66 114 IPR001005 -
Tpr3g4363 266 SMART sant 14 64 IPR001005 -
Tpr3g4363 266 CDD SANT 69 112 IPR001005 -
Tpr3g4363 266 PANTHER F14D16.11-RELATED 221 266 - -
Tpr3g4363 266 PANTHER F14D16.11-RELATED 1 231 - -
Tpr3g4363 266 Gene3D - 68 131 - -
Tpr3g4363 266 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Tpr3g4363 266 Pfam Myb-like DNA-binding domain 16 61 IPR001005 -
Tpr3g4363 266 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Tpr3g4363 266 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr3g4363 266 PANTHER F14D16.11-RELATED 221 266 - -
Tpr3g4363 266 PANTHER F14D16.11-RELATED 1 231 - -
Tpr3g4363 266 Gene3D - 7 67 - -
Tpr3g4363 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr3g4363 266 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4363 Tpr-Chr3 48626727 48628106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4363 1 262 MYB Transcription Factor Family AT3G28470 40.317 3.00e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4363 Myb_DNA-binding 3.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4363 K09422 - gmx:100795381 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4363 3 48626727 48628106 Tpr3g4363 3 48626727 48628106 ECH