Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4339 ATGCATCTACAATTGTCATTGGTTGTTTCAACTTCCATTTCTTCTCAATTTGAACATTCTTCCTTCTTAACCTCACACACTCATCACCCAAACAACAATCAAATCCACACAATGGTATCTTGCTTGAAGCCACAAACCAGCAATGAAGATGATTCTGTCATACTTTTTTCAACTTCTAATTCTTCCATTAGTCCTTCTTCATCTTCTTTCCACCATTCACCACCACATTCTTCATACAAACTTTCCATCAAAAACCTCACCTATACTCTGCACCCTTATAAAACCATTATCCCTTTTTCATTTTCTCACTTGACTCAAAAACCACATCCTATAAATATACTCAAATCTGTCTCTTTTGTTGCTCGAACATCCGAGATTGTTGCGGTTGTTGGTCCTAGTGGCACCGGAAAATCAACCCTTTTACGAATAATCGCGGGGCGAGTTAAAGACAAAGATTTCAATCCAAAAACTATATCAATCAATGATCAACCTATGAGTACTCCATCTCATTTAAGAAAAATTTGTGGCTTTGTTTCCCAAGAAGATAACTTGCTTCCACTTCTAACAGTGAAAGAAACATTGCTTTTTAGTGCAAAGTTTAGATTAAAAGAAATGACACCAAAAGAAAGAGAATTGAGAGTAGAAAATTTAATGCATGAGTTAGGACTTTTTCATGTTCAAGATAGTTTTGTTGGTGATGAAGAAAATAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTATCAATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACTTCAGGACTTGATAGTACTTCAGCTCTTCATGTGATTGAGCTTTTGTCATCAATGGCTAAATCAAAACAAAGGATAGTGATCCTTTCAATTCATCAACCTAGCTATAGAATATTGCAATATATTTCTAAGTTCTTAATCCTTTCTCATGGTTCACTTGTTCACAATGGTAATTTGGAATCACTAGAGAGAACCATATCCAATTTAGGATTTCACATTCCATTACAACTTAATCCTCTTGAATTTTCAATGGAAATTATACAAAGTTTAGAAGATTCTCGTAGTTCCGTCGCAGTCGTCGACGAAAATGAAACTTGTTTCCCAAGTTTCATGTGGCAAGAAGAAGAAAAGGGTTATGAAAAGGAAATTTTTGAAAATGATTTTTATGTGAACATGATGGAAATACTATTTTTATGTTCAAGATTTTGGAAGATTATTTATAGAACAAAACAACTTTTCTTAGCAAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGCAAGTGTTTATATAAAAGTAAGAAAAGATGAAGATGGAATTGCAGAAAGATTAGGTCTTTTTGCATTTAGTTTAAGTTTTCTTTTATCTTCAACAGTTGAAGCACTTCCAATATATCTTCAAGAAAGAACTGTTCTTATGAAAGAATCATCAAGAGGAGCTTATAGAATCTCTTCTTACATGATAGCAAACACTTTTGTTTTTCTTCCTTTTTTGTTTGTTGTTTCAACACTTTTTGCAGTTCCTGTTTATTGGATTGTAGGACTTAATCCTACAATCACTTCCTTCATTTTTTTCACTTTTGTGGTTTGGCTTATTGTGCTCATGGCAAGTTCTTTAGTACTTTTCTTAAGTTCTGTGTCTCCTGATTTCATTTCAGGAAATTCTCTAATCTGCACTGTTCTTGGAGCTTTCTTTTTGTTTTCTGGTTATTTTATACCAAAAGAGAGTATTCCAAAATATTGGCTTTTTATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCATTGCTAACAAATGAGTATTGGAATGTTGGAACTGAGTGTTTCTCATTCTCAAAAGGGTCTAATTCATCAAAGTGTTTGATTACTGGATTTGATGTGTTGAAGAGTAGAGGGATTGAAAAGGATAATAGGTGGATGAATGTTGGAATAATGGTTGGATTCTTTGTGTTCTATCGTTTGCTTTGTTGGGTTATACTTGCTAGAAAAGCATCCAAGACAACAATATAA 2031 0.3353 MHLQLSLVVSTSISSQFEHSSFLTSHTHHPNNNQIHTMVSCLKPQTSNEDDSVILFSTSNSSISPSSSSFHHSPPHSSYKLSIKNLTYTLHPYKTIIPFSFSHLTQKPHPINILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRVKDKDFNPKTISINDQPMSTPSHLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKEMTPKERELRVENLMHELGLFHVQDSFVGDEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMAKSKQRIVILSIHQPSYRILQYISKFLILSHGSLVHNGNLESLERTISNLGFHIPLQLNPLEFSMEIIQSLEDSRSSVAVVDENETCFPSFMWQEEEKGYEKEIFENDFYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKESSRGAYRISSYMIANTFVFLPFLFVVSTLFAVPVYWIVGLNPTITSFIFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVGTECFSFSKGSNSSKCLITGFDVLKSRGIEKDNRWMNVGIMVGFFVFYRLLCWVILARKASKTTI* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4339 676 ProSitePatterns ABC transporters family signature. 239 253 IPR017871 GO:0005524
Tpr3g4339 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 331 IPR027417 -
Tpr3g4339 676 SMART AAA_5 123 325 IPR003593 -
Tpr3g4339 676 Pfam ABC transporter 114 267 IPR003439 GO:0005524
Tpr3g4339 676 Gene3D - 99 337 IPR027417 -
Tpr3g4339 676 Pfam ABC-2 type transporter 297 364 IPR043926 GO:0140359
Tpr3g4339 676 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 38 669 - -
Tpr3g4339 676 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 38 669 - -
Tpr3g4339 676 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 340 IPR003439 GO:0005524
Tpr3g4339 676 Pfam ABC-2 type transporter 400 608 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4339 Tpr-Chr3 48454203 48456541 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4339 111 293 Calmodulin-binding Proteins AT2G36910 31.551 3.80e-13 71.2