Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4331 ATGGCTTCCGAGGGAAAACTCAACACTCGGAAGAGAAAATTTGGTGAAATCAAGAAAGTGGAAAAATCAAACAAGTCTCAAATGACGTTCTCAAATTCTATACTCACACTTTTCAACAAAGCAACAGAGCTCTCTGTTCTATGTAACGCAAAAACTGCACTCATTGTCGCATCACCCAACAACGAGCTCTATACATGTGGCTATCCTAATTGTGACGCCGTCATTCAACAATTCTTGACCGGAAAAGACACCATTGAAGATAGTGAGATAAAGGAGCAAGAGAATATTGTTGAAACCCTAAGGCTTGACTATGAGGCAATTGGAGATAAACTTGAAAAACTTATTGAAGAAGAAAAGAATTTGCAAGCTATCAATGATGAAGCAGAGAAGAATGATTCTATTTCCTCTTATTGGTGGAATGATCCTATTGATGATATGGATTTACAATCTCTTGAGGAATTTAAGACTTCTTTGGAAAAGTTTAGACTTAATTTAGGTTCAGCCTATGATGAAAAGAAGTTAATTTCCACACTTCGATCTTGA 543 0.3646 MASEGKLNTRKRKFGEIKKVEKSNKSQMTFSNSILTLFNKATELSVLCNAKTALIVASPNNELYTCGYPNCDAVIQQFLTGKDTIEDSEIKEQENIVETLRLDYEAIGDKLEKLIEEEKNLQAINDEAEKNDSISSYWWNDPIDDMDLQSLEEFKTSLEKFRLNLGSAYDEKKLISTLRS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4331 180 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 Gene3D - 22 107 IPR036879 GO:0003677|GO:0046983
Tpr3g4331 180 SUPERFAMILY SRF-like 12 80 IPR036879 GO:0003677|GO:0046983
Tpr3g4331 180 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 176 - -
Tpr3g4331 180 Coils Coil 97 131 - -
Tpr3g4331 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 65 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 SMART madsneu2 9 69 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Tpr3g4331 180 PANTHER MADS BOX PROTEIN 11 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4331 Tpr-Chr3 48320923 48321465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4331 9 162 Type I MADS-box Gene Family AT5G60440 30.000 1.28e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4331 SRF-TF 1.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4331 - - cam:101507050 167.162