Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4330 ATGGCTTCCAATGGAAAACTCAACACTCGGAAGAGAAAATTTGGTGAAATCAAGAAAGCGGAAAAATCAAACAAGTCTCAAATGACGTTCTCAAATTCTACACTTACACTTTTCAACAAAGCAACAGAGCTCTCTGTTCTATGCAACGCAAAAACTGCACTCATTGTCACATCACCCAACAACGAGCTCTATACATGTGGCTATCCTAATTGCGATGCGGTGATTCAACAATTCTTGACCGGAAAAGACACCATTCAAGATAGTGAGAAAAAGAAGCAAGAGAAGATTGTTGAAACCCTAAGGCTTGACTATGAGGCAATTGGAGATAAACTTGAGAAACTTTTGGAAGAAGAAAAGAATTTGCAAGCTATCAATGATGAGGCAGAGAAGAGTGGTTCGATTTCCTCTTGTTGGTGGAATAATCCTATTGATGATATGGATTTACAATCTCTTGAGGAATTTAAGAATTCTTTGGAAAAGTTCAGACTTAATTTAGGTTCGGCCTATGACGCAAAGAAGTTAATTTCCACACTTCGATCTTGA 543 0.3794 MASNGKLNTRKRKFGEIKKAEKSNKSQMTFSNSTLTLFNKATELSVLCNAKTALIVTSPNNELYTCGYPNCDAVIQQFLTGKDTIQDSEKKKQEKIVETLRLDYEAIGDKLEKLLEEEKNLQAINDEAEKSGSISSCWWNNPIDDMDLQSLEEFKNSLEKFRLNLGSAYDAKKLISTLRS* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4330 180 Gene3D - 23 106 IPR036879 GO:0003677|GO:0046983
Tpr3g4330 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 65 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 PANTHER MADS BOX PROTEIN 9 175 - -
Tpr3g4330 180 Coils Coil 97 131 - -
Tpr3g4330 180 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 SMART madsneu2 9 69 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 SUPERFAMILY SRF-like 12 80 IPR036879 GO:0003677|GO:0046983
Tpr3g4330 180 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Tpr3g4330 180 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4330 Tpr-Chr3 48318058 48318600 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4330 16 162 Type I MADS-box Gene Family AT5G60440 29.870 2.58e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4330 SRF-TF 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4330 - - cam:101507050 164.851