Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4329 ATGGCTGAACCAAACATGCAAATGTCACTTTCAGGTTCATCAAGTGACTCCGACCAAGAAACACCTTACACCACCACAACCCCCCAACCACCAACCACCATGGTCGGTGGTTCATCTTACCAACAAACACCTCCTTCAGCCAATTCACCAAACCGACAACCCATTTCACCACCATACAAGAAGCCACGTGGCAGACCACCAGGTTCAAAAAACAAACCAAAACCACCATTAGTAATAACACAAGACAATGAACAAGCCATGAAACCAGTAGTTATTGAAGTAGCTGCTGGTACTGATGTTCTTGAAGCTGTTATACAATTTGCTGTTCGTTCTGCTTCATGTTTAACTGTTCTTAGTGGTTCTGGTACAATTGCTGTTGCTACTCTTCATTACCCTCTTTGTCGTTCCCCTGCTTTTACTCTTCATGGTCCTTTTTCATTGATGAGTTTGACTGGTACTTTTTTGTATCCTCCGCCGCCACCGCCGCCACCTCCTCCTGTTTCTCTTTCTCTTCCTATTGGTCCTTCTGGAAACCCTAATCCTGTTGAATTGATGCCGGGGGGTATGAGTTTTGGGATTACTCTTGCTGGTTTGCAAGGACAAGTTTTTGGTGGGATTATTGGTGGAAAAGTTATTGCTGGTGGTGATGGTGTTAAGATTACTGTTTCTTTGTTTAAGAATCCTGAATTTCATAGAGCTGGTGGTGTTATTCTTGGAGCTGATGATGATGATGAGGAAGATGATGCTGGTGGTGGTGATGATAACAATGGTAATGGAAATGGTGGAAATAATGGTGGTGGTGATCAAGGTGCTAGTGGTAGTGGTGGTGCTGGTGGAAGTGATCAGAATGTGTCTAGTTTCGGGGCACATAATCCAATGCCTCTGAATTTAGCACATTCTGATCAAAACTTCGTACCGTGGAACCATCCTTAA 933 0.4384 MAEPNMQMSLSGSSSDSDQETPYTTTTPQPPTTMVGGSSYQQTPPSANSPNRQPISPPYKKPRGRPPGSKNKPKPPLVITQDNEQAMKPVVIEVAAGTDVLEAVIQFAVRSASCLTVLSGSGTIAVATLHYPLCRSPAFTLHGPFSLMSLTGTFLYPPPPPPPPPPVSLSLPIGPSGNPNPVELMPGGMSFGITLAGLQGQVFGGIIGGKVIAGGDGVKITVSLFKNPEFHRAGGVILGADDDDEEDDAGGGDDNNGNGNGGNNGGGDQGASGSGGAGGSDQNVSSFGAHNPMPLNLAHSDQNFVPWNHP* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4329 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 232 - -
Tpr3g4329 310 CDD DUF296 88 214 IPR005175 -
Tpr3g4329 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 11 310 - -
Tpr3g4329 310 MobiDBLite consensus disorder prediction 258 310 - -
Tpr3g4329 310 ProSiteProfiles PPC domain profile profile. 84 228 IPR005175 -
Tpr3g4329 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 215 IPR005175 -
Tpr3g4329 310 MobiDBLite consensus disorder prediction 1 74 - -
Tpr3g4329 310 Gene3D - 87 243 - -
Tpr3g4329 310 MobiDBLite consensus disorder prediction 50 73 - -
Tpr3g4329 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 310 IPR014476 GO:0003680
Tpr3g4329 310 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4329 Tpr-Chr3 48296287 48297219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4329 60 290 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.288 1.03e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4329 - - cam:101503818 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4329 3 48296287 48297219 Tpr3g4329 3 48296287 48297219 ECH