Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4321 ATGGAAGAACCGATTGAGTTGCAATCGGAAGACAATAAAACCTCGATGGATAAAAATAACAAAAGAAAGCTCAAAACACCGGCGCAGCTTATGGCCTTGGAAGATTTTTATAATGATCACAAATACCCCACAGAGGAAATGAAACTTGAACTCGCTAATGAATTAGCGCTGACAGAAAAGCAAATCTCAGGATGGTTTTGTCACAGAAGGTTAAAAGATAAGAGATTGATGAAAGGTGAAATATGTGCTAATGGACGTCAAGACCGTTCAAGTGGCGTTGTTCAGGATCGTGGCAGTGGACGGCAAGACCGTTCAAGTGGCGTTGTTCAGGATCGTGGCAGTGGCCGGCAGGATTCATGTGGAAGTACTAAGCATGATGACTATAGGTATTCAGAACCCAAAGAGGTTGAGAGTCATGGCGTCTATAATCATGAATTATCAGCTGCAGAAATGAACTATGCACACAGAAACCATTATACAGAAAATGATAGTGAAACGGATAACACATCATCCGAAAATAGCTCATCTTTGCAAGAACGATTGTTTCTTCAAGGACAGGATCTGTATGATACGGAGCCTTCAAGATACATTACACCAAATGGATCTCTTCCACCCTTAAATCCCAAGGGATATAAACCATCAGGATATTTAAAAATGAAGGGAGAGATAGAGCATGCTGCTATAACTGCTGTTAAGAATCGGTTAGGAAGGAATTATCTGGAAGATGGTCCGCTACTTAATATAGATTTTGATACAATTCCACCAGGGGCATTTGTATTTCAAACTGCGAATCCAGTTAATGAACCATACCATGTTGCAAACCCGTCACTTTCAAGTTCTCCTGAAGTCTCACCTGCAAAAAGGAAATATAGTCTTAACTCTAGATATGATTCAAATTTGAACAAATTAAGTTCCGAAGATTTACAAATGGAAGGAAGTGGCTTTGGGTCCTTGCATGGTTCTGATTTCCACGATAAGAAATCCCGCCAGCATATAAAACAAAGAACGAATATTCAGGGCCGTGCAATTCGCGCCAATCATTTGCATGGCAAGAACTTTTCCAATGATTTGTACGTAGACTCGACTGGGGAAGCACCTGCTTATGATAGCACTAGAAATCATAGAATAGGAACTAAACATGTAGTTGAGAGGATGAGTTCTGATTCTGCATCTAGTCCTAGTGATACTGAAGAGAATAACCCGGCGGTTAAGCAGATAAATCCACTACTACATGATTACAGTAACAGCAATGTGAAAAATGTACAAAGGAGTGAATATGTAAAATCTAAACCTTCACATTCAATACGTAATTCTCAAATTTCTGAGGATACTGGAGGAAGAGGGCTTTCTGAAAGAATGGAACAAAAGTTTAATGGGGGTAGAAAGATTAAAAAACAATATCATGAGTCAGATGGAGTAAGAATGCCTTCGAAAGAAACAATGGTTGCAAAGCGAGCGAAAGTTGATTTACTTCATCAATATGATATTAAACAAGCACATGTTGCTGAGATTGAACCAAGGAAAACTCAGAGATCTGCTGTCGAGATGCCATCTAGCTTTAGTGAGGATGATGAAACCAGTTCCTCACTGGATTGA 1596 0.3954 MEEPIELQSEDNKTSMDKNNKRKLKTPAQLMALEDFYNDHKYPTEEMKLELANELALTEKQISGWFCHRRLKDKRLMKGEICANGRQDRSSGVVQDRGSGRQDRSSGVVQDRGSGRQDSCGSTKHDDYRYSEPKEVESHGVYNHELSAAEMNYAHRNHYTENDSETDNTSSENSSSLQERLFLQGQDLYDTEPSRYITPNGSLPPLNPKGYKPSGYLKMKGEIEHAAITAVKNRLGRNYLEDGPLLNIDFDTIPPGAFVFQTANPVNEPYHVANPSLSSSPEVSPAKRKYSLNSRYDSNLNKLSSEDLQMEGSGFGSLHGSDFHDKKSRQHIKQRTNIQGRAIRANHLHGKNFSNDLYVDSTGEAPAYDSTRNHRIGTKHVVERMSSDSASSPSDTEENNPAVKQINPLLHDYSNSNVKNVQRSEYVKSKPSHSIRNSQISEDTGGRGLSERMEQKFNGGRKIKKQYHESDGVRMPSKETMVAKRAKVDLLHQYDIKQAHVAEIEPRKTQRSAVEMPSSFSEDDETSSSLD* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4321 531 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 100 - -
Tpr3g4321 531 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 99 529 - -
Tpr3g4321 531 SMART HOX_1 18 80 IPR001356 GO:0003677
Tpr3g4321 531 MobiDBLite consensus disorder prediction 88 117 - -
Tpr3g4321 531 CDD homeodomain 21 75 IPR001356 GO:0003677
Tpr3g4321 531 MobiDBLite consensus disorder prediction 502 531 - -
Tpr3g4321 531 MobiDBLite consensus disorder prediction 82 139 - -
Tpr3g4321 531 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Tpr3g4321 531 MobiDBLite consensus disorder prediction 426 445 - -
Tpr3g4321 531 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 99 529 - -
Tpr3g4321 531 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 100 - -
Tpr3g4321 531 Gene3D - 9 91 - -
Tpr3g4321 531 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Tpr3g4321 531 MobiDBLite consensus disorder prediction 1 26 - -
Tpr3g4321 531 MobiDBLite consensus disorder prediction 118 139 - -
Tpr3g4321 531 SUPERFAMILY Homeodomain-like 18 84 IPR009057 -
Tpr3g4321 531 MobiDBLite consensus disorder prediction 426 449 - -
Tpr3g4321 531 MobiDBLite consensus disorder prediction 512 531 - -
Tpr3g4321 531 MobiDBLite consensus disorder prediction 7 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4321 Tpr-Chr3 48230456 48235943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4321 6 274 Homeobox Transcription Factor Family AT4G03250 51.282 1.40e-67 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tpr3g4321 Homeodomain 7.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4321 - - mtr:MTR_3g045830 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4321 3 48230456 48235943 Tpr3g4321 3 48230456 48235943 ECH
Tpr3g4321 3 48230456 48235943 Tpr4g3376 4 39736335 39742121 PCT