Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4319 ATGATGTCACGGTCTGATACGATTATGATGACGAGTACTTCAACTAATTCGGATCTGAATAGAGCTGGTACTGTTGAAAGAGACATTGAGCAGGCAATTACTGCTTTAAAGAAAGGGGCTTATTTGCTTAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCATTTCGGCTTTCTAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGAACGCCTATCTTTCAAAGATATCCACGGCCTGCAAAGGAATACCAGTCATTTTCACTTATCTATAATGACAGATCACTGGACCTGATTTGCAAAGACAAAGATGAAGCTGAGGTATGGTTCAGTGGATTGAAAGCATTGATTTCACGGAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAGTTAATAGTCCTCGAACATACACTCGAAGAAGTTCTCCCTTACATTCTCCATTTGATAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGGCTTCATAGCCCGTATGAAAGCCCTCCAGAGAATGGTTTAGATAAAGCATTTTCTGATGCGACTTATTATCCTATTCCTCCAAAGGGTTTCTTCCCGCCAGATTCGGCCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCGGATAGTGTGCATGGCCACATGAAGGCGATGCCTATGGATGCTTTTCGAGTTAGTCTATCTAGTGCTGTTAGCTCTTCTAGCCAAGGTTCTGCCCGTGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATAGTGTTTTGGGTGGTGGGGTTCACCGAGTTGGGAGTTGTTTTGATGTCAAAATGGATTCTCTATTGCCGAAAGCCTTGGAATCAGCTGTGGTTCTAGATGTACAGAATATTGCTTGTGGTGAGCAACATGTGGCCTTAGTGACGAAACAAGGTGAAATTTTCTCTTGGGGAGAAGAATCAGGAGGCAGGCTCGGGCATGGAGTTGATTCTGATGTCCCCCATCCAAAGCTCATTGAATCTTTAAGTAATACAAATATTGAACTTGTTGCTTGTGGGGAGTATCATACTTGTGCTGTGACACTTTCAGGAGATCTTTATACATGGGGGGATGGCACTTACAATTATGGTCTTCTGGGACATGGAAACCAGGTGAGTCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGTATACATGTTTCATCTATTTCTTGTGGTCCTTGGCATACTGCTGTTGTAACCTCTTCCGGGAAGTTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTATGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGAGATGGAGACAAAGGTAGACTTGGGCATGGTGACAAGGAATCTAAACTTGTTCCAACCTGTGTTTTAGCCCTTAGGGAACCTAACTTTTGTCAAGTTGCTTGTGGGCATAGTATGACTGTTGCACTTTCTAGAGCAGGTCATGTCTATACCATGGGCAGTTGTGTATATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGTTACCAACCCGAATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCCTGTGGTGCTTATCACGTTGCAGTTTTGACTTCGAGGACTGAAGTTTACACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGCGATACTGATGATAGAAACTCCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACGAATTTCACTGCTGCCATATGCTTGCATAAGTGGGTTTCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAGCGCCATAATTGTTACAATTGTGGACTTGTTTTTTGTCACTCATGCAGCAGTAAGAAGTCTCTTAAGGCTTCAATGTCACCAAATCCCAACAAACCTTATCGTGTCTGTGATAACTGTTTTAACAAAATAAGGAAAGCTACAGAAACTGATGGTTCGTCTCACTCTTCTATTAGCAGAAGAGGAAGTATTAATCAAGGGTCACTTGAGTCTATTGGTAAGGATGATAAATTGGATTCCAGATCTCAAAATCAATTTTCTAGATTCTCTACAATGGAGTCCTTCAAACAAGTAGACAGAAGATCTTCAAAGAAAAATAAAAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGTTCCTAATGGAGGTTCACAATGGGGAGCAATGCATATTTCTAAATCTTCTAATCCTGTGTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCAGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGGCGGCCTAGTCCACCACGGTCAACTACTCCAACCCCAACGCTGGGAGGACTGACAACCCCAAAGATAGTTGTCGATGATACGAAGAGGACTAACGAAAACCTCAATCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACTTGACTCGAAAATCCCAGCTTCAAGAAGATGAGTTGGAAAAAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCTCAGTTGAAGGACATGGCTGAGAGGCTTCCCATAGGAGCAGCTAGGAATGTCAGATCACCATCTAACTCCATTTCCAATGACTTAAGCATTGCTTCCATCGATCGCCTGAATATTCAAGCAACAAGCCCAGAATCAGACGTTACTGGCTCATATAACCAGTTATTTTCAAATGGGTCAAGCACCGTCACCGACCGTTCTGTAGGCCACTGTAAACATACTCTATCAGATGCAGCTAGCAGAAATGGGAGCAAAACAAAGGATAACGAATCCCGTAACGAGACTGAATGGGTAGAGCAAGATGAACCTGGTGTATATATTACTCTCACTTCCCTATCAGGCGGTGCAATAGATCTTAAGAGAGTTCGATTCAGTCGCAAGCGGTTTAGTGAGAAACAAGCAGAACACTGGTGGGCTGAGAATCGGATAAGAGTATATGAAAAGTACAACGTGCGCATGATTGACAAATCGACCATTGGTATTGGGAGTGTGGACCTAGCTCATTGA 3333 0.4332 MMSRSDTIMMTSTSTNSDLNRAGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEVNSPRTYTRRSSPLHSPFDSNESLQKDSGDHLRLHSPYESPPENGLDKAFSDATYYPIPPKGFFPPDSASGSVHSVSSGGSDSVHGHMKAMPMDAFRVSLSSAVSSSSQGSARDDGDALGDVFIWGEGTGDSVLGGGVHRVGSCFDVKMDSLLPKALESAVVLDVQNIACGEQHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGKLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVLALREPNFCQVACGHSMTVALSRAGHVYTMGSCVYGQLGNPQADGKLPTRIEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMSPNPNKPYRVCDNCFNKIRKATETDGSSHSSISRRGSINQGSLESIGKDDKLDSRSQNQFSRFSTMESFKQVDRRSSKKNKKLEFNSSRVSPVPNGGSQWGAMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDTKRTNENLNQEVVKLRSQVENLTRKSQLQEDELEKTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPIGAARNVRSPSNSISNDLSIASIDRLNIQATSPESDVTGSYNQLFSNGSSTVTDRSVGHCKHTLSDAASRNGSKTKDNESRNETEWVEQDEPGVYITLTSLSGGAIDLKRVRFSRKRFSEKQAEHWWAENRIRVYEKYNVRMIDKSTIGIGSVDLAH* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4319 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 483 493 IPR000408 -
Tpr3g4319 1110 SUPERFAMILY FYVE/PHD zinc finger 665 736 IPR011011 -
Tpr3g4319 1110 Gene3D - 253 506 IPR009091 -
Tpr3g4319 1110 Gene3D - 507 676 IPR009091 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 737 756 - -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 613 664 IPR000408 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 780 797 - -
Tpr3g4319 1110 Pfam Unstructured region between BRX_N and BRX domain 963 1030 - -
Tpr3g4319 1110 SUPERFAMILY RCC1/BLIP-II 276 666 IPR009091 -
Tpr3g4319 1110 Pfam Transcription factor BRX N-terminal domain 926 956 IPR027988 -
Tpr3g4319 1110 Pfam FYVE zinc finger 665 731 IPR000306 GO:0046872
Tpr3g4319 1110 CDD FYVE_like_SF 674 727 - -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 1025 1039 - -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 444 493 IPR000408 -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 338 386 IPR000408 -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 508 557 IPR000408 -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 389 441 IPR000408 -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 561 609 IPR000408 -
Tpr3g4319 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 614 661 IPR000408 -
Tpr3g4319 1110 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 29 1096 - -
Tpr3g4319 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 669 731 IPR017455 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 737 808 - -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 445 496 IPR000408 -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 1016 1039 - -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 843 866 - -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 431 447 IPR000408 -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 447 461 IPR000408 -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 550 568 IPR000408 -
Tpr3g4319 1110 PRINTS Chromosome condensation regulator RCC1 signature 608 629 IPR000408 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 146 188 - -
Tpr3g4319 1110 CDD PH_PLC_plant-like 27 137 - -
Tpr3g4319 1110 SMART fyve_4 663 732 IPR000306 GO:0046872
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 276 337 IPR000408 -
Tpr3g4319 1110 MobiDBLite consensus disorder prediction 151 179 - -
Tpr3g4319 1110 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Tpr3g4319 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 389 IPR000408 -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 444 IPR000408 -
Tpr3g4319 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 29 1096 - -
Tpr3g4319 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Tpr3g4319 1110 SUPERFAMILY PH domain-like 28 136 - -
Tpr3g4319 1110 Coils Coil 875 951 - -
Tpr3g4319 1110 Gene3D - 27 145 IPR011993 -
Tpr3g4319 1110 Pfam Pleckstrin homology domain 30 136 IPR001849 -
Tpr3g4319 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Tpr3g4319 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 738 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4319 Tpr-Chr3 48191755 48202873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4319 935 1101 Major Intrinsic Protein MIP AT1G31880 31.088 2.20e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4319 - - gmx:100791947 1909.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4319 3 48191755 48202873 Tpr3g4319 3 48191755 48202873 ECH