Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4315 ATGGCTAGGAAGAAAGTAAAGCTTGCCTACATAACCCATGACTCAAAGAGGAGGGGAACATTCAAGAAAAGAAAAAATGGTTTATTTAAGAAGCTTAATGAAATAAGTACCCTTTGTGGAATTGAAGCGTGCGCTATAATTTTTAGTCAAAACGATCATCAACCAGAAGTTTGGCCGTCACCATGGGGAGGAGTTCAAAAGGTGTTGTCGAGGTTTAAGAGTTTATCTGAAATGGAACAAAGAAAAAAGATGCTGAATCAAGAGAGTTTCTTGAAGCAAAGGATCCAGAAGGGACAAGAACAATTGAAGAAACAAAGGAATGAAAACAGAAAGAAGGAAATGACCAATCTTATGTTTCAATGTGTTAATGCTGCCCATATTATTGGCAATGTTGGCCTCAATGATCTCAATGATCTCTCATGGATGATTGATCAGAACTTGAAACAAATCGAAAGGCGTACCAATGAGACTCAAGCTGAAGAGGTGGTCGAAAATCGTGATGAAAATGTGATTGGTAGGGAGCAGGGCATGGAGAACAATGTTGATGCAATGCAAAGTCAACATTGGTCATTGGACTTCACCAGCAACAATTTTGGTGATGTGTTGCCATTTGAAAATGGTAATAATAATGTACCAAATGGTCGGTGGCCTTATTAA 657 0.3851 MARKKVKLAYITHDSKRRGTFKKRKNGLFKKLNEISTLCGIEACAIIFSQNDHQPEVWPSPWGGVQKVLSRFKSLSEMEQRKKMLNQESFLKQRIQKGQEQLKKQRNENRKKEMTNLMFQCVNAAHIIGNVGLNDLNDLSWMIDQNLKQIERRTNETQAEEVVENRDENVIGREQGMENNVDAMQSQHWSLDFTSNNFGDVLPFENGNNNVPNGRWPY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4315 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Tpr3g4315 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g4315 218 Coils Coil 88 115 - -
Tpr3g4315 218 CDD MADS_SRF_like 2 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g4315 218 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Tpr3g4315 218 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Tpr3g4315 218 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Tpr3g4315 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 - -
Tpr3g4315 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 179 - -
Tpr3g4315 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g4315 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g4315 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4315 Tpr-Chr3 48167812 48168979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4315 1 153 Type I MADS-box Gene Family AT5G48670 58.170 2.69e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4315 SRF-TF 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4315 - - gmx:100816084 235.343