Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4311 ATGAACATGGAAGGAATAGCAACTGGGTCACATGAAAGAAGCGAACTTGTTCGTGTTAGAAATGGTTCAGCTTCTGGGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGATACTGTTGGATTAACAGCAACTGGCGATGTCTTTGTTGCTTGCCATGAGTGTCCTTTCCCACTTTGTCATCCTTGTTATGAATACGAGCGAAAAAACGGCCAATCATGTCTACAATGCAAGACTAAATACAAAATTCACAAAGGTCCTCGAGTGAAGGGAGACGACGATGAAGATGATCTGAGGAATGAGGTCAAGTATGGTCAAGGAAATAATTCTAAGACAGGATGGCAATGGGACGAAGATGCGGACCTCTCTTCATCTTCCGGACATGATTCTCAATTACAAAATCCCCATCTCGTAAATGGACAGCTGATGTCTGGTGAGATTTTAGGTGCTACTTCTGATACTCAATCTGTGCAAACTACATCAGGTCCTTTGGGTCAATCCGAAAATGTTCACTCACGACCCTATGTTGATCAAAAGCAACCAGGTCTTGAGAGTGACGAGGAGATCAGAAGAGTGCCAGAGATGGGAGGTGAATCTGCCGGAACCTCAGCTTCTCGTAAAGGCACCGGTTCTACTGCAGGTCCTGAACGTGCTCAGGGGGCTGGAGAGGGTCAAAAGAAGAGAGGAAGAAGCCCAGCCGACAAAGAAAGCAAACGACTAAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAGTGACTTGGAAACAAGAGTCAATGACTTAGAGAAGAAGAATTCAGAGCTTAAAGAAAAACTTTCCACTTTGCAAAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACGACAGCAAGCAGAAGAGGGAACAACGGTGGTGCCAACAATGCTGAATGA 960 0.4417 MNMEGIATGSHERSELVRVRNGSASGSKPLKNLNGQICQICGDTVGLTATGDVFVACHECPFPLCHPCYEYERKNGQSCLQCKTKYKIHKGPRVKGDDDEDDLRNEVKYGQGNNSKTGWQWDEDADLSSSSGHDSQLQNPHLVNGQLMSGEILGATSDTQSVQTTSGPLGQSENVHSRPYVDQKQPGLESDEEIRRVPEMGGESAGTSASRKGTGSTAGPERAQGAGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLSDLETRVNDLEKKNSELKEKLSTLQNENQMLRQILKNTTASRRGNNGGANNAE* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4311 319 MobiDBLite consensus disorder prediction 157 262 - -
Tpr3g4311 319 Gene3D Single helix bin 262 303 - -
Tpr3g4311 319 CDD mRING-HC-C4C4_CesA_plant 36 85 - -
Tpr3g4311 319 Pfam Zinc-binding RING-finger 28 102 IPR027934 -
Tpr3g4311 319 MobiDBLite consensus disorder prediction 226 262 - -
Tpr3g4311 319 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 246 261 IPR004827 GO:0003700|GO:0006355
Tpr3g4311 319 MobiDBLite consensus disorder prediction 109 136 - -
Tpr3g4311 319 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 241 304 IPR004827 GO:0003700|GO:0006355
Tpr3g4311 319 MobiDBLite consensus disorder prediction 157 179 - -
Tpr3g4311 319 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 151 309 IPR044280 GO:0000981|GO:0045944
Tpr3g4311 319 Coils Coil 238 307 - -
Tpr3g4311 319 SUPERFAMILY Leucine zipper domain 243 301 IPR046347 GO:0003700|GO:0006355
Tpr3g4311 319 SMART brlzneu 239 303 IPR004827 GO:0003700|GO:0006355
Tpr3g4311 319 MobiDBLite consensus disorder prediction 1 24 - -
Tpr3g4311 319 CDD bZIP_HY5-like 244 295 - -
Tpr3g4311 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 109 IPR013083 -
Tpr3g4311 319 Pfam bZIP transcription factor 240 301 IPR004827 GO:0003700|GO:0006355
Tpr3g4311 319 SUPERFAMILY RING/U-box 24 108 - -
Tpr3g4311 319 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 151 309 - -
Tpr3g4311 319 MobiDBLite consensus disorder prediction 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4311 Tpr-Chr3 48108199 48112239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4311 5 186 Glycosyltransferase AT4G32410 57.447 1.32e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tpr3g4311 zf-UDP 4.1e-36 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4311 K10999 - aprc:113855639 505.753