Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4304 ATGACATCCACAATTCTCAAAAGATCTTCTTCCATATTTTCACGGCGTTTCTTCGCCGCCATTACTTCCGTCGAACTACTTCCAATTCGTCACCGCAGCACCTTCGCCTTATCCTCCGCCGTCTACGGCAAAGGAGACAGACTTTTTCACGCGAAATCTGAACCGTTGAACTTTCACTCCTCGTCGTTGGTTTCTCGTGGTGCGCAACTTGCTGTGGATTACGATGATGTGCAGCATGATGAAGGTTTCAGTGGTAGTGGCGATGAAGGACTTGAGATCGCAAAGCTTGGAATTTCTAAGGAGATTGTTAATGCTCTTGCGAAGAAAGGGATCGCGAAACTCTTCCCCATTCAGAGAGCTGTACTGGAACCTGCGATGCAAGGGAGGGATATGATTGCTCGAGCTAGAACAGGAACTGGGAAAACTCTGGCTTTTGGGATACCCATCTTGGATAAGATTATTAAGTTTAATGCTAAAAATGGGAAAAGAAGGGATCCTATGGCTATGGTGTTAGCACCGACCAGAGAACTTGCACGTCAGGTTGAAAAGGAATTCAACGAGGCTGCACCTAACTTGGAAACAGTCTGTCTTTATGGGGGTATGCCTATTCAGCAACAAATCCACCAACTTGGTGGTGGCGTAGATATTGTAGTTGGCACACCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCACTGAAATTGAAGGATGTTAGTTATGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCAGTGGAGATTATCTTGCAGAAGTTGCCTTCAAAGCGTCAAACTGTTATGTTCTCGGCGACAATGCCTTCTTGGATAAAGAATATTTCACGCAATTACCTAAACAAACCCTTAACAATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCATTGTACTCTATTGCATCTAATGCCTATTCTAAAGCAGGAATTCTTGCACCTCTTATAAAAGAACATGCTAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGACTATCACATATAATGTCAAAAACCCTTAAATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGAGAAAGAACTCTCACTGGCTTTAGAAACAGTTATTTCAATGTTTTAGTGGCAACTGATGTTGCTTCTCGTGGGCTTGATATACCAAATGTTGATCTTGTAATCCATTATGAACTTCCAAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGCGCTGGGAAGAAAGGAACTGCTATTCTTGTCCACACAGAAAATCAATCCAGGGCTGTAAAGACAATTGAGCGAGATGTTGGATGTACATTCAAAGAGTTACCTAAGATTACTGTTGAAAGTGGATCAGCAGACATGTTTGGTAGCATGAGTGGTGATCGATACGGCTCTTTGGGAGGCAGGGATCGTCGATCAGGCGGTACAGGTTTTGGTGGTAGTTCTGGATCTGGCCGGACCGGCTATGGGAAATCCAGTGGTTTTGGTGGCTCTGGTTCAAGTCGGTCAAGAGTGGGGTTTGGGGAATATTCTGGTAAAACGGATAAATATGGTGGTGGAGGATTTAACAGTTCAGGCCGTTCCAGTGGCTTTGGAAATTTTGGCACAGGTAAATCTGGGAGATTTGGCGACAGAAATTGA 1698 0.4335 MTSTILKRSSSIFSRRFFAAITSVELLPIRHRSTFALSSAVYGKGDRLFHAKSEPLNFHSSSLVSRGAQLAVDYDDVQHDEGFSGSGDEGLEIAKLGISKEIVNALAKKGIAKLFPIQRAVLEPAMQGRDMIARARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPMAMVLAPTRELARQVEKEFNEAAPNLETVCLYGGMPIQQQIHQLGGGVDIVVGTPGRVIDLLKRGSLKLKDVSYVVLDEADQMLQVGFQEAVEIILQKLPSKRQTVMFSATMPSWIKNISRNYLNKPLTIDLVGDSDQKLADGISLYSIASNAYSKAGILAPLIKEHAKGGKCIVFTQTKRDADRLSHIMSKTLKCEALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAILVHTENQSRAVKTIERDVGCTFKELPKITVESGSADMFGSMSGDRYGSLGGRDRRSGGTGFGGSSGSGRTGYGKSSGFGGSGSSRSRVGFGEYSGKTDKYGGGGFNSSGRSSGFGNFGTGKSGRFGDRN* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4304 565 Pfam DEAD/DEAH box helicase 115 284 IPR011545 GO:0003676|GO:0005524
Tpr3g4304 565 CDD SF2_C_DEAD 310 437 - -
Tpr3g4304 565 Gene3D - 314 474 IPR027417 -
Tpr3g4304 565 MobiDBLite consensus disorder prediction 496 526 - -
Tpr3g4304 565 Gene3D - 92 300 IPR027417 -
Tpr3g4304 565 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 469 IPR001650 -
Tpr3g4304 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 450 IPR027417 -
Tpr3g4304 565 Pfam Helicase conserved C-terminal domain 324 430 IPR001650 -
Tpr3g4304 565 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 296 IPR014001 -
Tpr3g4304 565 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 555 - -
Tpr3g4304 565 MobiDBLite consensus disorder prediction 486 526 - -
Tpr3g4304 565 CDD DEADc 102 297 - -
Tpr3g4304 565 SMART ultradead3 110 313 IPR014001 -
Tpr3g4304 565 PANTHER RNA HELICASE 3 555 - -
Tpr3g4304 565 SMART helicmild6 350 430 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4304 Tpr-Chr3 48049703 48055574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4304 96 462 Eukaryotic Initiation Factors Gene Family AT3G19760 33.423 2.28e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4304 - - gmx:100802553 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4304 3 48049703 48055574 Tpr4g3367 4 39587492 39593977 PCT