Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4296 ATGAACAACACTTTTCCTGAATGGAATTTTGGTAGCGATACTTTTGTCGCCAATCAAAAGAAGCAACCTATGGGGCTAGACCATGAACTTGTGGAGCTTCTATGGCATAATGGACAAGTAGTATTACATAGCCAAACAAATAAGAAACCACTTGTGAATACAACTTCAAACACTTCAAGACAAGTTCATAAGAATCTTCAATCAACAACATTAAGTAACTTGATTCAAGCCGATGAAACAGTTTCATGGATCCAACAATTTCCTCTTGAGGATCCACTTGAACAAGAATTATGTTCAAATCTATTAAATGAACTTCCACCTTGTGATGTTGAGTCTTACAATTCACAAACAACGAATACAAAACCATCATTTGTTGAAGAATTCTCGGGAATTCCTATGCCGGCTCCAAGATTTCATCATCATGTTTCCGATTCATCGCAGAGAAACAATGATTTGTGTGGAACAAATAAGGTTGTAAACTTTTCTCACTTTTCAAGACTACCTAATGTTTCTTTAGCAACTTCTAACGGCGATGATGCAAAGTTTAGAGACAAAATTACCGGTAATTTCTCACAATGTGATATTAGAGAGTGTTCGACAATGACAGTTGGTTCGAGTTATTGTGGAAGCAATCACGTCCAACAAGATCCGGATGTAAGCAGGGTATCAAGCAACGGTGTTTGGACTACTATCTCTACCGAGCCGGAAATAATCAAAGGTGATGTTCACAAAACAATTCCTCGGCATGAGAAAGGGAAATCGGAGATGCTTGAACCGGTGGTTACTTCATCTTCTGGTGGTTCGGGAAGTAGCCTTGGAAAAACTTGTTCCTTATCTACAAGAAGCCACGGACAAAAGAGAAAAGAGATAGACGTTGAAGATTCAGTCGAACAAAGTGAGGACACGGAATTTAAACCAGCCGTGCGAAAGAAGGTATCTCAGAAGTCAGGGTCAGCTCGAAGGAACCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGGCGAAGAGATAGGATTAATGAGAAGATGAAAGCGTTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAAGCAATTGATTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGCAACCAATGATGCTACCAGGATTTCAACAATATATGTCACAAATGAGCATGGGAATGACTACACCTTCATTTCCTCCGATTCAAAATCCGATGCAAGTACCGAGAATGCCTCTTGATCCATCCGTGTCTTCGCCTCAGACACCAAATCAGACATTAATGTGCCAAAATCCTCTATTAGGTGCCTTTAATTATCAAAATCAGATACAAAATCCAGCTCTTTCAGAGCAGTACGCGCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATGATTCCAACCAGCAATAGTAGTGGACCAATGAATGGAGCTGCAAACATTAATGATGCTTTGAGTGGTTAA 1551 0.3978 MNNTFPEWNFGSDTFVANQKKQPMGLDHELVELLWHNGQVVLHSQTNKKPLVNTTSNTSRQVHKNLQSTTLSNLIQADETVSWIQQFPLEDPLEQELCSNLLNELPPCDVESYNSQTTNTKPSFVEEFSGIPMPAPRFHHHVSDSSQRNNDLCGTNKVVNFSHFSRLPNVSLATSNGDDAKFRDKITGNFSQCDIRECSTMTVGSSYCGSNHVQQDPDVSRVSSNGVWTTISTEPEIIKGDVHKTIPRHEKGKSEMLEPVVTSSSGGSGSSLGKTCSLSTRSHGQKRKEIDVEDSVEQSEDTEFKPAVRKKVSQKSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIDYLKSLQLQLQVMWMGSGMQPMMLPGFQQYMSQMSMGMTTPSFPPIQNPMQVPRMPLDPSVSSPQTPNQTLMCQNPLLGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQTVQNSQTMIPTSNSSGPMNGAANINDALSG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4296 516 PANTHER TRANSCRIPTION FACTOR PIF5 1 503 - -
Tpr3g4296 516 Coils Coil 329 349 - -
Tpr3g4296 516 SMART finulus 329 378 IPR011598 GO:0046983
Tpr3g4296 516 Gene3D - 318 379 IPR036638 GO:0046983
Tpr3g4296 516 MobiDBLite consensus disorder prediction 257 327 - -
Tpr3g4296 516 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Tpr3g4296 516 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Tpr3g4296 516 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 503 IPR031066 -
Tpr3g4296 516 MobiDBLite consensus disorder prediction 282 310 - -
Tpr3g4296 516 MobiDBLite consensus disorder prediction 258 280 - -
Tpr3g4296 516 CDD bHLH_AtPIF_like 323 385 - -
Tpr3g4296 516 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 389 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4296 Tpr-Chr3 47982552 47986835 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4296 8 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.363 3.16e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g4296 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4296 K16189 - gmx:100800166 699.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4296 3 47982552 47986835 Tpr3g4296 3 47982552 47986835 ECH