Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4294 ATGGGAAACAAGGTGAAACTTGCATTCATAACACATAATACAAAGAGAAAGGCAGCATTCAGAAAGAGAAAAATTGGTATACTGAAGAGGCTTAATGAAATCACCACTCTTTGTGGAATCGAAGCATGTGGAATACTCTATGATAATAACAATCCTCAACCAGTGGTTTGGCCAACAGATTCAGGAGCCAAAAGTGTGCTATCAAGGTTTGCGAGTTTGCCTGAATCGGAGCAAAGTAATAATAAGGTGAATCAAGAGGACTTCTTGTGGAAAAGGATTGAGAAAGACTTCGAGAAATTGAAGAAAGAAAGGGAGGAAACTCGGAAAAATGTTATGGCCATAATCATTAACCATTACATTTATACTAAAGAATTTAATGGCAATTCAATGAGCAAAAATGATCTAAATGATATGTCATGTTTTATTGATGAGAATCTGAAAGAAATTTATCGAAAGATGGAAGGAATGAAAATTGAATCCCAAGAGCATGATGGAAATGAAGCTGGAGTAATGAATGAAACAAAGAAACAATAA 534 0.3483 MGNKVKLAFITHNTKRKAAFRKRKIGILKRLNEITTLCGIEACGILYDNNNPQPVVWPTDSGAKSVLSRFASLPESEQSNNKVNQEDFLWKRIEKDFEKLKKEREETRKNVMAIIINHYIYTKEFNGNSMSKNDLNDMSCFIDENLKEIYRKMEGMKIESQEHDGNEAGVMNETKKQ* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4294 177 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 162 - -
Tpr3g4294 177 CDD MADS_SRF_like 1 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g4294 177 PANTHER MADS BOX PROTEIN 3 162 - -
Tpr3g4294 177 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Tpr3g4294 177 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Tpr3g4294 177 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tpr3g4294 177 Coils Coil 90 110 - -
Tpr3g4294 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 51 IPR002100 GO:0003677|GO:0046983
Tpr3g4294 177 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4294 Tpr-Chr3 47970557 47971434 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4294 4 169 Type I MADS-box Gene Family AT5G48670 38.690 4.35e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4294 SRF-TF 1.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4294 - - cam:101496969 182.956