Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4291 ATGACGGGTAGAAATATGGAACTTGAATACATAGTTAAAGATTCGAAGAGGAAGTCATCGTTCCAAAAAAGGAAAAATGGTATAAGTAAGAAGATTAATGAAATAACCACTCTTTCTGGAGCGAATGTGTGTGCTATAATCTACGATGAAAACAATCCTCGAGCAACGGTTTGTCCTTCAAAAGAAGAAGTCCAAATGGTGTTGGACAAGTTTAGGAGTTTTCCAGAATCAGAACAAAGGAAATCGATGGTGGATCATGAGGGCTATGTGAGGCAATCCATAGAAAAAGCTCGTGAGAAGTTGAAGAAAGAAAAGGACAAATCCAAGAAGAAGGAAATGAATAATCAAATTTATCATTTCATTCAAACTGGTGAAATCGATGGAAATGTGAGTGAGAGTGATCTCGAAGATCTGTCTTCGCTTATTGTTACTAACATAAAGGAAGTCGATCAGAGGATTGAATGGAGTCAAGCCCAAGAGGAGACCGACAATTGA 495 0.3778 MTGRNMELEYIVKDSKRKSSFQKRKNGISKKINEITTLSGANVCAIIYDENNPRATVCPSKEEVQMVLDKFRSFPESEQRKSMVDHEGYVRQSIEKAREKLKKEKDKSKKKEMNNQIYHFIQTGEIDGNVSESDLEDLSSLIVTNIKEVDQRIEWSQAQEETDN* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4291 164 Coils Coil 91 116 - -
Tpr3g4291 164 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Tpr3g4291 164 PANTHER MADS BOX PROTEIN 2 162 - -
Tpr3g4291 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g4291 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Tpr3g4291 164 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
Tpr3g4291 164 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tpr3g4291 164 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Tpr3g4291 164 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4291 Tpr-Chr3 47943438 47944369 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4291 1 154 Type I MADS-box Gene Family AT5G48670 39.610 1.58e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g4291 SRF-TF 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4291 - - mtr:MTR_2g035580 186.037