Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr3g4291 | ATGACGGGTAGAAATATGGAACTTGAATACATAGTTAAAGATTCGAAGAGGAAGTCATCGTTCCAAAAAAGGAAAAATGGTATAAGTAAGAAGATTAATGAAATAACCACTCTTTCTGGAGCGAATGTGTGTGCTATAATCTACGATGAAAACAATCCTCGAGCAACGGTTTGTCCTTCAAAAGAAGAAGTCCAAATGGTGTTGGACAAGTTTAGGAGTTTTCCAGAATCAGAACAAAGGAAATCGATGGTGGATCATGAGGGCTATGTGAGGCAATCCATAGAAAAAGCTCGTGAGAAGTTGAAGAAAGAAAAGGACAAATCCAAGAAGAAGGAAATGAATAATCAAATTTATCATTTCATTCAAACTGGTGAAATCGATGGAAATGTGAGTGAGAGTGATCTCGAAGATCTGTCTTCGCTTATTGTTACTAACATAAAGGAAGTCGATCAGAGGATTGAATGGAGTCAAGCCCAAGAGGAGACCGACAATTGA | 495 | 0.3778 | MTGRNMELEYIVKDSKRKSSFQKRKNGISKKINEITTLSGANVCAIIYDENNPRATVCPSKEEVQMVLDKFRSFPESEQRKSMVDHEGYVRQSIEKAREKLKKEKDKSKKKEMNNQIYHFIQTGEIDGNVSESDLEDLSSLIVTNIKEVDQRIEWSQAQEETDN* | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr3g4291 | 164 | Coils | Coil | 91 | 116 | - | - | |
Tpr3g4291 | 164 | ProSiteProfiles | MADS-box domain profile. | 1 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr3g4291 | 164 | PANTHER | MADS BOX PROTEIN | 2 | 162 | - | - | |
Tpr3g4291 | 164 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr3g4291 | 164 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Tpr3g4291 | 164 | SUPERFAMILY | SRF-like | 4 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Tpr3g4291 | 164 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Tpr3g4291 | 164 | Gene3D | - | 14 | 92 | IPR036879 | GO:0003677|GO:0046983 | |
Tpr3g4291 | 164 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN | 2 | 162 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr3g4291 | Tpr-Chr3 | 47943438 | 47944369 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr3g4291 | 1 | 154 | Type I MADS-box Gene Family | AT5G48670 | 39.610 | 1.58e-28 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-M-type | Tpr3g4291 | SRF-TF | 1.6e-12 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr3g4291 | - | - | mtr:MTR_2g035580 | 186.037 |