Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4254 ATGTCTTCCGACACTTCTATGAAAGGGGAATTGTCGATGAAGACATCGTTTTTGGGTTTGAGGTTATGGGTTTTGATAGGATTAGGTGTTGGTGTATTTATAGTTTTGATTCTTTGCTTATTATCTATATGGATAATGTTTCGGAGAAAAACAAGGAGATCGGTTGACAAGTACTCTTCATCGCAAATACCACATGTCTCAAAAGATATCAAAGTTGACAAGGTTGGTGTACAGCCGTCTCATGATCAAGTAGAGAGTGTGTCTATTAATGTTCATGATAACATGGCAAGTGATAAAAATTCAGATAAGTTGTTTGTTCATTTGAGTAAATCTAGCGATCCTGATAATATTAGTCAGTGTAGCTCGGTTTATCACCATGAGAGAGGATTGAGTTCGATGTCGGGAGAACACGGGAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCTTCTCCTCTTATTGGATTGCCCGAAGGTTCTCATCTTGGATGGGGCCATTGGTTTACACTTAGAGATCTTGAACTTTCAACTAACCGTTTCGCTGCTGGGAATGTGATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGAAGGTTGATCAATGGATCTGAGGTTGCAGTTAAGAAACTTCTTAACAATTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTCGACGCTATAGGCCACGTCAGACATAAACATCTGGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGTGCAATGAGACAACATGGAGTACTTACGTGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCAAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCAAGCAACATTTTAATTGATAGCGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAAGCGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTTGCACCCGAATATGCTAATACCGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCCTACTAGAAGCGGTCACCGGAAGGGACCCTGTAGACTATACACGTCCTGCCAACGAGGTGAATCTTGTTGAGTGGATGAAGATGATGGTGGGGGCAAAGAGGATCGAGGAAGTTGTGGACTCAAGCCTTGAAGCAAAACCACCAACTCGTGCCTTAAAGCGGTCCCTTCTTGTTGCGTTTAGGTGCGTTGATCCTGATTCTGAGAAGAGACCCAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCTGATGAATATCCATTCAGAGAGGATCGAAGGAATAGAAGGAGCCGTACCGCCAGCATGGAAATTGAATCTCTAAAGGATATCTCCGGTCCTTCAGATATCGATAAGACGGCAAAAGGTTCTGAAGAATCTGCACTTGAGAACCACATGACTTAA 1515 0.4165 MSSDTSMKGELSMKTSFLGLRLWVLIGLGVGVFIVLILCLLSIWIMFRRKTRRSVDKYSSSQIPHVSKDIKVDKVGVQPSHDQVESVSINVHDNMASDKNSDKLFVHLSKSSDPDNISQCSSVYHHERGLSSMSGEHGNFGTVKKQYMVTASPLIGLPEGSHLGWGHWFTLRDLELSTNRFAAGNVIGEGGYGVVYKGRLINGSEVAVKKLLNNLGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSSESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWMKMMVGAKRIEEVVDSSLEAKPPTRALKRSLLVAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRRSRTASMEIESLKDISGPSDIDKTAKGSEESALENHMT* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4254 504 ProSitePatterns Protein kinases ATP-binding region signature. 187 210 IPR017441 GO:0005524
Tpr3g4254 504 PANTHER RECEPTOR-LIKE KINASE PLANT 2 493 - -
Tpr3g4254 504 SUPERFAMILY Protein kinase-like (PK-like) 164 454 IPR011009 -
Tpr3g4254 504 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Tpr3g4254 504 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4254 504 Gene3D Transferase(Phosphotransferase) domain 1 257 470 - -
Tpr3g4254 504 Coils Coil 201 221 - -
Tpr3g4254 504 PANTHER OS01G0323000 PROTEIN 2 493 - -
Tpr3g4254 504 Pfam Protein kinase domain 184 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4254 504 MobiDBLite consensus disorder prediction 462 504 - -
Tpr3g4254 504 CDD STKc_IRAK 187 453 - -
Tpr3g4254 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Tpr3g4254 504 ProSiteProfiles Protein kinase domain profile. 181 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr3g4254 504 MobiDBLite consensus disorder prediction 481 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4254 Tpr-Chr3 47380108 47384690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4254 19 455 Trihelix Transcription Factor Family AT1G70460 41.084 6.13e-97 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Tpr3g4254 Pkinase 4.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4254 - - gmx:100813931 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g4254 3 47380108 47384690 Tpr3g4254 3 47380108 47384690 ECH
Tpr3g4254 3 47380108 47384690 Tpr4g3304 4 38999398 39004494 PCT
Tpr4g2640 4 29312310 29316236 Tpr3g4254 3 47380108 47384690 PCT