Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4249 ATGTTGTTGTTTACTGATTCAATGTTAAAATTCAATCTCTTTCATGTTTTCACTCATACTACTACACTTCACTCTACTTTAACTGTTCATTGCAGCAATCATTTTTCTAATTTATCTGTTTCTGTTTCCAACACAAATCAAGATGACTCTTTTATGTTATCAAACATCATTAACTCAGCTGGGTTGTCCCCTGAAACATCCCTTAAACTTAAAAACTCTGATGATGGCCCAAATGCTGTAATTCAACTTCTCAGAAACTATGACTTCTCTGATTCCCAAATATCAACCCTTGTTAAGAAACATCCTAGAGTACTTTTATCAAACCCTGAAAAGACCCTTTTGCCTAAACTCGAGTTTTTGCTATCTATTGGGGTTTCAACCACTGATCTCCCTAAAATCCTAATTGGTAACACTACCTTTTTTAAAAGAAGTTTGGAGGAAAACATTATACCTCGTTATCACATTATCAGGACCCTTGTTCGCAATGATAAAGAGCTAATTTCAGTTATGAAGAATTGGACAACCAACGTTTACCCTGATTCCATGGTTCCAAACATTGAGGTTTTAAGGAATCTTGGTGTGCCTCAACATTCGGTTTCCTTTATGGTAACCAATTTTCCCAGTGGAGCATTCGCCAAGCATTCTAGATTTGTTGAGGCTGTTAATTTAGTTAAGGAAATGGGGTTCGATCCTTTGAAGTCGAATTTTGTTTTGGCAGTTCCAGTAATTGCAAGGATGAACAAAGAGACGTGGGAATTGAAATTGAAGATTTTTGAGAGGTGGGGATGGTCGAAAGATATCTGTCTTTTGGTGTTCCAAAAGTATCCTCGATGTATGGCGACCTCGGCAAAAAAGATTCAAAAAATAATGAGTTTCTTGGTGAACGATATGGGTTTTACACCATACGACATTGCTAGATGCCCTTCGGTTTTTAACCGTAGCTTGGAGAAAACAATTGTCCCTAGATGTACAGTTATTAAGATTTTGATGTCAAAGGGTTTCATAAAGAGTAGTTTGAGCATAAATACCTTTATTATGATAAGGGAGAAAACATTTTGGGAGAGATATCTTACCGCTTTTCAGAAGGATTATCCACTCTTATTGGATGCATATAAAGGTCAGAATTCCGATTGA 1134 0.3642 MLLFTDSMLKFNLFHVFTHTTTLHSTLTVHCSNHFSNLSVSVSNTNQDDSFMLSNIINSAGLSPETSLKLKNSDDGPNAVIQLLRNYDFSDSQISTLVKKHPRVLLSNPEKTLLPKLEFLLSIGVSTTDLPKILIGNTTFFKRSLEENIIPRYHIIRTLVRNDKELISVMKNWTTNVYPDSMVPNIEVLRNLGVPQHSVSFMVTNFPSGAFAKHSRFVEAVNLVKEMGFDPLKSNFVLAVPVIARMNKETWELKLKIFERWGWSKDICLLVFQKYPRCMATSAKKIQKIMSFLVNDMGFTPYDIARCPSVFNRSLEKTIVPRCTVIKILMSKGFIKSSLSINTFIMIREKTFWERYLTAFQKDYPLLLDAYKGQNSD* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4249 377 Pfam mTERF 240 352 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 Pfam mTERF 81 230 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 Gene3D Transcription termination factor 3, mitochondrial 176 366 IPR038538 -
Tpr3g4249 377 Gene3D Transcription termination factor 3, mitochondrial 57 175 IPR038538 -
Tpr3g4249 377 PANTHER CGI-12 PROTEIN-RELATED 25 374 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 374 - -
Tpr3g4249 377 SMART mt_12 234 264 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Tpr3g4249 377 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4249 Tpr-Chr3 47334975 47336559 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tpr3g4249 mTERF 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4249 K15032 - gmx:106799612 384.8