Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr3g4245 | ATGGACAAACATTCTGGGGATTCTTTGCCAGTTCATGGTGCTGCAGGGCTATCTGGGATTTCTTCGCTTAATATTCCGAATAAAGTGGGAAGTGGCGCATGGAGAATACCACACACAACTGATGTATTTCATGATTCAAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACAAGATTCTGAACAATATGGTCAACCGGTGGATGATAACTTGCTAACATTAGGAAAAGTTCACAAAGAGGACGAAGGACATGATCCTTTTGACGATGATTTTGAAACCAGCGCCATTGGAAACATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTAGGTTACCAAATCAACTCGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTTTTGGTATTTCAAAGATGAGCATATCCGATGGGATTGCTTCAAATGGTATTGGACCTTATGCAATCCCAAATGGCGTGGCAACAGTGGCTGGGGAGCATCCGTATGGTGAGCATCCATCTAGGACATTGTTTGTTCGAAACATCAACAGTAATGTCGAGGACTCGGAATTAAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAATCAAGGAACTCTCGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGCCAAATATTTGGAGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTGAATCGAAGTGACATTGCCGGCAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGGGCACGCAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGAGTCAAGTGGGTTCACCTATAGCCCATTCTCCCCCAGGTAGCTGGGCGCAATTTAGTAGTCCTGTTGAACCTAATCCATTAGGTTCTTATAGCAAGTCTCCTGGTTTGGGTCAGGCCAGCCCTATAAGCACCAACCATTTATCTGGATTGGCTGCAATTCTTTCCCCTCATGCATCAACATCTCCCAAAATTGCGCCTATTGGCAAGGACCCTGGAAGAGTTTCAAGTCATATGTTTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTTTCCTGAACAAAAAGTAAATGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAAACAAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGCCCGACTCCTTACTCGGAGCATTCAAACACATCTGCCTGGTCTGCATCTTCCCTTGGGCATCCATTTACATCTAGTAGCCAGAGGCAGGGTTTCCCATACACGGGTCATCGCAATCCTTTTATTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCTTCTGGCCTTCCTCTTGAACGAAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCATGAGCCCCATCGGATTTGGGAATTCAAATCACGGTGATGGGAATTTTATGATGAACATGGGTTCCCGTTCATCTGTCGGGCTTGGTCTTGGCCTTTCAGCAACTACCAGCGAAATTGGTTCACCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTTCTTGGAAATAGTTTGTATGCCGGACCAGGATTATCTAGCATTGAAGGATTTGGTGATCGTGGACGAAGTAGGCGACCTGACAATAATGTGAACCAAATTGAGAGTAAGAAGCTTTACCAGCTTGATCTTGACAAAATCATCAATGGTGAAGATACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAAAATCACCAGGGAACTTATGATTTCCTCTACTTGCCAATTGATTTTAAAAATAAGTGCAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTATAAGGCCTTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCGATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGTCAACCGGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCAAAGGGCAATTCGGACGAGAACCTCGAGAAAGATTAA | 2586 | 0.4269 | MDKHSGDSLPVHGAAGLSGISSLNIPNKVGSGAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQDSEQYGQPVDDNLLTLGKVHKEDEGHDPFDDDFETSAIGNMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFVNGGGFEMDFEPQESLSFGISKMSISDGIASNGIGPYAIPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQVGSPIAHSPPGSWAQFSSPVEPNPLGSYSKSPGLGQASPISTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSSHMFANSGSTQGVAFQHSISFPEQKVNASPRPISAFGETNSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSASSLGHPFTSSSQRQGFPYTGHRNPFIGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNHGDGNFMMNMGSRSSVGLGLGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGLSSIEGFGDRGRSRRPDNNVNQIESKKLYQLDLDKIINGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDENLEKD* | 862 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr3g4245 | 861 | Pfam | RNA recognition motif 2 | 701 | 797 | IPR007201 | - | |
Tpr3g4245 | 861 | Gene3D | - | 289 | 385 | IPR012677 | - | |
Tpr3g4245 | 861 | MobiDBLite | consensus disorder prediction | 377 | 402 | - | - | |
Tpr3g4245 | 861 | SMART | rrm1_1 | 290 | 358 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | SMART | rrm1_1 | 205 | 273 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | SMART | rrm1_1 | 703 | 779 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 204 | 277 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | Gene3D | - | 192 | 288 | IPR012677 | - | |
Tpr3g4245 | 861 | CDD | RRM1_MEI2_like | 203 | 279 | IPR034453 | - | |
Tpr3g4245 | 861 | CDD | RRM3_MEI2_like | 704 | 789 | IPR034454 | - | |
Tpr3g4245 | 861 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 270 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 291 | 356 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | SUPERFAMILY | RNA-binding domain, RBD | 703 | 788 | IPR035979 | GO:0003676 | |
Tpr3g4245 | 861 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 289 | 362 | IPR000504 | GO:0003723 | |
Tpr3g4245 | 861 | SUPERFAMILY | RNA-binding domain, RBD | 201 | 364 | IPR035979 | GO:0003676 | |
Tpr3g4245 | 861 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 14 | 856 | - | - | |
Tpr3g4245 | 861 | MobiDBLite | consensus disorder prediction | 842 | 861 | - | - | |
Tpr3g4245 | 861 | Gene3D | - | 695 | 790 | IPR012677 | - | |
Tpr3g4245 | 861 | CDD | RRM2_MEI2_like | 288 | 358 | - | - | |
Tpr3g4245 | 861 | PANTHER | PROTEIN MEI2-LIKE 2 | 14 | 856 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr3g4245 | Tpr-Chr3 | 47288078 | 47295831 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr3g4245 | 199 | 512 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 23.782 | 9.85e-12 | 66.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr3g4245 | - | - | gmx:100812324 | 1504.96 |