Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4245 ATGGACAAACATTCTGGGGATTCTTTGCCAGTTCATGGTGCTGCAGGGCTATCTGGGATTTCTTCGCTTAATATTCCGAATAAAGTGGGAAGTGGCGCATGGAGAATACCACACACAACTGATGTATTTCATGATTCAAATGATGTTAGCTTGTTTTCTACTTCGCTGCCTGTTCTTCCACATGAAAAGTTAAATTTGACTGATTCTGAACAAGATTCTGAACAATATGGTCAACCGGTGGATGATAACTTGCTAACATTAGGAAAAGTTCACAAAGAGGACGAAGGACATGATCCTTTTGACGATGATTTTGAAACCAGCGCCATTGGAAACATGCTTCCTGATGATGAAGACGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTAGTAGGTTACCAAATCAACTCGAGGATTTGGATGAAAATGATCTGTTTGTTAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGTCTTAGTTTTGGTATTTCAAAGATGAGCATATCCGATGGGATTGCTTCAAATGGTATTGGACCTTATGCAATCCCAAATGGCGTGGCAACAGTGGCTGGGGAGCATCCGTATGGTGAGCATCCATCTAGGACATTGTTTGTTCGAAACATCAACAGTAATGTCGAGGACTCGGAATTAAGAACTCTATTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCACAGGGGCTTCGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCCTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCGGAAAAAGATATAAATCAAGGAACTCTCGTAGTGTTCAATTTAGATCCATCAGTATCAAATGACGACCTTCGCCAAATATTTGGAGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCATAAGTTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTGAATCGAAGTGACATTGCCGGCAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGGGCACGCAGAAACTTGATGCAACAACTGACTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGGAGTCAAGTGGGTTCACCTATAGCCCATTCTCCCCCAGGTAGCTGGGCGCAATTTAGTAGTCCTGTTGAACCTAATCCATTAGGTTCTTATAGCAAGTCTCCTGGTTTGGGTCAGGCCAGCCCTATAAGCACCAACCATTTATCTGGATTGGCTGCAATTCTTTCCCCTCATGCATCAACATCTCCCAAAATTGCGCCTATTGGCAAGGACCCTGGAAGAGTTTCAAGTCATATGTTTGCCAACTCTGGATCAACACAAGGAGTAGCTTTTCAGCATTCTATCTCCTTTCCTGAACAAAAAGTAAATGCAAGTCCTAGGCCTATATCTGCTTTTGGTGAAACAAATTCAAGTTCATCGAGTGTTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGCCCGACTCCTTACTCGGAGCATTCAAACACATCTGCCTGGTCTGCATCTTCCCTTGGGCATCCATTTACATCTAGTAGCCAGAGGCAGGGTTTCCCATACACGGGTCATCGCAATCCTTTTATTGGCTCTCAGCACCATCATCATGTAGGATCTGCTCCTTCTGGCCTTCCTCTTGAACGAAATTTCAGATACTTTCCAGAGTCACCTGATGCTTCTCTCATGAGCCCCATCGGATTTGGGAATTCAAATCACGGTGATGGGAATTTTATGATGAACATGGGTTCCCGTTCATCTGTCGGGCTTGGTCTTGGCCTTTCAGCAACTACCAGCGAAATTGGTTCACCTAATTTCGGAATGATGTCCCTACCTGGTCATGGTTCCTTGTTTCTTGGAAATAGTTTGTATGCCGGACCAGGATTATCTAGCATTGAAGGATTTGGTGATCGTGGACGAAGTAGGCGACCTGACAATAATGTGAACCAAATTGAGAGTAAGAAGCTTTACCAGCTTGATCTTGACAAAATCATCAATGGTGAAGATACAAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCGAAGATGCTGCTTGCTGCAATTGATGAAAATCACCAGGGAACTTATGATTTCCTCTACTTGCCAATTGATTTTAAAAATAAGTGCAATGTGGGTTATGCTTTCATCAATATGGTCTCTCCTTCACACATCGTCGCCTTCTATAAGGCCTTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTGGCATATGCACGGATTCAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAATGAGGATAAGCGGTGTAGGCCGATCCTCTTTCATTCAGAAGGCCAAGATACTAGTGACCAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGTCAACCGGATGGATCTTACTCAGGTGATATGTTGGAGAGCCCAAAGGGCAATTCGGACGAGAACCTCGAGAAAGATTAA 2586 0.4269 MDKHSGDSLPVHGAAGLSGISSLNIPNKVGSGAWRIPHTTDVFHDSNDVSLFSTSLPVLPHEKLNLTDSEQDSEQYGQPVDDNLLTLGKVHKEDEGHDPFDDDFETSAIGNMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFVNGGGFEMDFEPQESLSFGISKMSISDGIASNGIGPYAIPNGVATVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLTQELEQDEARTFRSQVGSPIAHSPPGSWAQFSSPVEPNPLGSYSKSPGLGQASPISTNHLSGLAAILSPHASTSPKIAPIGKDPGRVSSHMFANSGSTQGVAFQHSISFPEQKVNASPRPISAFGETNSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSASSLGHPFTSSSQRQGFPYTGHRNPFIGSQHHHHVGSAPSGLPLERNFRYFPESPDASLMSPIGFGNSNHGDGNFMMNMGSRSSVGLGLGLSATTSEIGSPNFGMMSLPGHGSLFLGNSLYAGPGLSSIEGFGDRGRSRRPDNNVNQIESKKLYQLDLDKIINGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIVAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTSDQEHFLSSNLNICIRQPDGSYSGDMLESPKGNSDENLEKD* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4245 861 Pfam RNA recognition motif 2 701 797 IPR007201 -
Tpr3g4245 861 Gene3D - 289 385 IPR012677 -
Tpr3g4245 861 MobiDBLite consensus disorder prediction 377 402 - -
Tpr3g4245 861 SMART rrm1_1 290 358 IPR000504 GO:0003723
Tpr3g4245 861 SMART rrm1_1 205 273 IPR000504 GO:0003723
Tpr3g4245 861 SMART rrm1_1 703 779 IPR000504 GO:0003723
Tpr3g4245 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 277 IPR000504 GO:0003723
Tpr3g4245 861 Gene3D - 192 288 IPR012677 -
Tpr3g4245 861 CDD RRM1_MEI2_like 203 279 IPR034453 -
Tpr3g4245 861 CDD RRM3_MEI2_like 704 789 IPR034454 -
Tpr3g4245 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 270 IPR000504 GO:0003723
Tpr3g4245 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 356 IPR000504 GO:0003723
Tpr3g4245 861 SUPERFAMILY RNA-binding domain, RBD 703 788 IPR035979 GO:0003676
Tpr3g4245 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 362 IPR000504 GO:0003723
Tpr3g4245 861 SUPERFAMILY RNA-binding domain, RBD 201 364 IPR035979 GO:0003676
Tpr3g4245 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 856 - -
Tpr3g4245 861 MobiDBLite consensus disorder prediction 842 861 - -
Tpr3g4245 861 Gene3D - 695 790 IPR012677 -
Tpr3g4245 861 CDD RRM2_MEI2_like 288 358 - -
Tpr3g4245 861 PANTHER PROTEIN MEI2-LIKE 2 14 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4245 Tpr-Chr3 47288078 47295831 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4245 199 512 Eukaryotic Initiation Factors Gene Family AT3G16380 23.782 9.85e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4245 - - gmx:100812324 1504.96