Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4232 ATGGAGCTTCCAAATGAAAGTGGAGAAGGATCTGCTCAAAAGAAATTGGGAAGAGGAAAAATTGAAATTAAGAGAATTGAGAATACAACCAATAGGCAAGTCACTTTTTGCAAACGACGCAACGGATTGTTGAAGAAAGCCTATGAATTATCTGTACTTTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCAACCCGCGGTCGCTTGTATGAGTATGCTAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAATACAGAATCTGTATCTGAAGCTAATACCCAGTTTTACCAGCAAGAATCATCGAAATTGAGGAGACAAATTCGAGATATTCAGAATCTAAATAGACATATCCTTGGTGAAGCTTTGGGATCTCTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGATGGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTACAAAACCACAACAATTATCTTCGAACTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAGCAAAATTTGATGCCAGAAACAATGTGTGAGTCCTTACCTTCACAAACATATGACCGAAATTTCTTTCCGGTTAATCTTCTTGGATCGGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCTCTCCAACTTGTGTGA 726 0.3981 MELPNESGEGSAQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLMADVEFMQKREIELQNHNNYLRTKIAEHERAQQQQQNLMPETMCESLPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4232 241 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 12 226 - -
Tpr3g4232 241 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Tpr3g4232 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g4232 241 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Tpr3g4232 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 226 - -
Tpr3g4232 241 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g4232 241 Gene3D - 28 98 IPR036879 GO:0003677|GO:0046983
Tpr3g4232 241 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Tpr3g4232 241 Coils Coil 105 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4232 Tpr-Chr3 47073134 47079979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4232 1 241 MADS-box Gene Family AT3G58780 70.281 1.28e-118 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g4232 K-box 7.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4232 K09264 - gmx:100808734 426.787