Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4228 ATGTCGTCATCAAATTCACCATGTGCAGCGTGCAAGTATCTCCGACGAAAGTGCACCCAAGAATGTGATTTCGCCCCCTATTTCCTCCCCGAAAGTCCACAGAGATTTGCTAATGTGCACCGTGTATTCGGTGCAAGCAACGTCGCTAAGCTCTTAAAAGAGCTTAACGCGACTGACCGTGAAGACGCGGTGAAATCCCTAGCATACGAGGCAGAGTCTCGCATAAAAGATCCGGTTTATGGCTGTGTTGGTTTGATCTCGATGCTCCAACAGCGGTTAAAAGAAATCCAACATGAGCTCCATGCCGCGAAAAAGGAACTCTCTAGTTACAATCTGAATCCTCAAACTATGCAGTACTTGTTGGCACATCCCGGAACGGTTATAATGCCTCAGCAGCAACAACAATGGAATAATGCTCAATTTGCGGGTTTCGCGAACAATTTTCCTCCTGAGATTGCTGGAGGAGGTGGGATAGTTATTCGTGATGGTCAGCAGCAGCAGCAAGATCAGGAGTTTATGGAAGCTCATCAGTTACTTGCTGCTCAGCAGCAGTATATGCTTAGGTATAGTGGTGGACATCAGATGAGTGGTGCTGCTGTTTCTGATGTTGCTGATGGTGGTCAGTCATTAGGAATGGGAAATTTTGATAACGGTGCTGGTGGCGGAGGCGGTGCTGGTGGCGGTGGCGGAGGCGCGGTTGGTTATTATCAGATTCAGCAACAAGGAGGAGGAGAACAACAACAGAATTATCATCATCATAATGTTAGTGTTCCTGCTGCTCATGGTAATCCAATTGAGGCACAGCTTCTGTTGTCTCCACAGAATCAGGAAACTGGTGAGGATGGTAAAAGTGTTGGAAGCACACATCATTCTTGTTGA 879 0.471 MSSSNSPCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNATDREDAVKSLAYEAESRIKDPVYGCVGLISMLQQRLKEIQHELHAAKKELSSYNLNPQTMQYLLAHPGTVIMPQQQQQWNNAQFAGFANNFPPEIAGGGGIVIRDGQQQQQDQEFMEAHQLLAAQQQYMLRYSGGHQMSGAAVSDVADGGQSLGMGNFDNGAGGGGGAGGGGGGAVGYYQIQQQGGGEQQQNYHHHNVSVPAAHGNPIEAQLLLSPQNQETGEDGKSVGSTHHSC* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4228 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 252 - -
Tpr3g4228 292 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Tpr3g4228 292 Coils Coil 86 113 - -
Tpr3g4228 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 252 - -
Tpr3g4228 292 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4228 Tpr-Chr3 46993626 46994504 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4228 1 135 AS2 family AT5G66870 65.185 3.52e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr3g4228 LOB 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4228 - - mtr:MTR_3g452660 317.005