Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4153 ATGGAACACATGAACAATATTGGTGATGGAGCGAATGATGAAAATGGGTTGTTCTGTATTATGGAAAGAGGTAGCGGTGGTGGCGGAGAGGGTGCGGGTGGTTGTGGTAGCGGAGGTGGTGGTGATGAGGTGAGTTTAAAAAAGGGTCCTTGGACAACAGCTGAGGATGCAATTTTGATAGATTATGTGACAAAACATGGTGAAGGAAATTGGAATGCTGTTAAAAGGAATACAGGTTTAAATCGTTGTGGAAAGAGTTGTAGGCTTAGATGGGCTAATCATTTAAGGCCCAATTTAAAAAAAGGTGCATTTTCTCCCGATGAAGAGAAACTCATTGTTGAACTACATGCTCAATTTGGGAACAAATGGGCAAGAATGGCTGCTTTGTTACCTGGAAGAACAGACAACGAAATAAAAAATTATTGGAATACAAGGATCAAACGTCGTCAAAGACAAGGTCTTCCACTATATTCAGACGAACATAATCATGTCAACACGCCAACCACGCCAACAACACCAGCTTCACCATGTGTCACTCCAAATGGATCAAACCCTCACAACATTACAACAAAATTTGAGTTTTTCAATCAAAACCAACACCAATATCAACAACAACACCATCACCACCTTCCTTTATCTCCAACATCAACCCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACAACATCAACAACAATCTTATTCTCCTCACACTTTCTTAGACACTTCACCTACACCATTGTCATCTTCTTCACCACTGTCTTTCACTTTCCAAAGACCCGCGCCACTCTTATCAGCCCCTCTTCGCCTCAAACGATTTCGTTCGAGTCCAAACTTCAGCCTTCAAGTCCCTAATTCCATTACACAAAATTGTTCCTCCTCACTCCATGATCCTTCTTTATCCTCACACCATGATAGTAGTTTTAGGTTCCCAATTCATTACAACGCGAGTTTCCCTCAATACTTTCATACTCCTTTGTTGGAATCCGATCGAGGAGTTTCTTCTTCGTCTTCGCCTTTCTCAACAAAGTTGGAGTTACCTTCAAACCAATATTCAAGACTATCTTCAGAACAAGATATTAAAACTAATAATGTTGAGTTCAATAATGATCCTAATTCTTTACAAAACAATAGTAGTGTCTTGATGGGAGATCTTTTAATGGATGCACAAACATTGGCATGTGAACAAAATTCAAAGAAAAGAAATTACTTGAGCTTAAATGAAGGAAATGATATGTATAATGGATGTCAAAGTTATGATGATTTCCCACTTAGCACTCTTTATTGGTCTTCTAATTCAGAACAAAAACCAAAAGAAGAAGCACAGGACCTAACCAAATTCATGAACGATGACATGTCAACAATGTTAAGTGTGATGCCTTCTTCCACAATGCAAAACCAAGATTGGAATAATAATACTAATATTAAGAATGGATCAGATCAAGTCTCTAATATTGTTCAATCTTCTAGTGGTGTGAATTTGGCAGATGAAAATTTTGGACTCGATATTAAACCTATAGCTTCATTGTTTCCTCTCACAAACACAACAGATCATAATAATGAAAATAATGATTGCTACACTTGGGATAATTTACCTGGACTATGTTAA 1620 0.3802 MEHMNNIGDGANDENGLFCIMERGSGGGGEGAGGCGSGGGGDEVSLKKGPWTTAEDAILIDYVTKHGEGNWNAVKRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHNHVNTPTTPTTPASPCVTPNGSNPHNITTKFEFFNQNQHQYQQQHHHHLPLSPTSTHHHSPLSSPLQHRQQHQQQSYSPHTFLDTSPTPLSSSSPLSFTFQRPAPLLSAPLRLKRFRSSPNFSLQVPNSITQNCSSSLHDPSLSSHHDSSFRFPIHYNASFPQYFHTPLLESDRGVSSSSSPFSTKLELPSNQYSRLSSEQDIKTNNVEFNNDPNSLQNNSSVLMGDLLMDAQTLACEQNSKKRNYLSLNEGNDMYNGCQSYDDFPLSTLYWSSNSEQKPKEEAQDLTKFMNDDMSTMLSVMPSSTMQNQDWNNNTNIKNGSDQVSNIVQSSSGVNLADENFGLDIKPIASLFPLTNTTDHNNENNDCYTWDNLPGLC* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4153 539 MobiDBLite consensus disorder prediction 155 175 - -
Tpr3g4153 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 95 IPR017930 -
Tpr3g4153 539 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 534 - -
Tpr3g4153 539 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 30 534 - -
Tpr3g4153 539 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Tpr3g4153 539 Pfam Myb-like DNA-binding domain 101 144 IPR001005 -
Tpr3g4153 539 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Tpr3g4153 539 MobiDBLite consensus disorder prediction 159 175 - -
Tpr3g4153 539 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Tpr3g4153 539 CDD SANT 50 95 IPR001005 -
Tpr3g4153 539 Gene3D - 47 100 - -
Tpr3g4153 539 SMART sant 100 148 IPR001005 -
Tpr3g4153 539 SMART sant 47 97 IPR001005 -
Tpr3g4153 539 CDD SANT 103 144 IPR001005 -
Tpr3g4153 539 SUPERFAMILY Homeodomain-like 45 142 IPR009057 -
Tpr3g4153 539 MobiDBLite consensus disorder prediction 199 249 - -
Tpr3g4153 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Tpr3g4153 539 Gene3D - 103 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4153 Tpr-Chr3 46111606 46113566 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4153 46 163 MYB Transcription Factor Family AT2G32460 80.508 1.76e-65 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4153 Myb_DNA-binding 6e-14 CL0123