Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4152 ATGGAACACATGAACAATATTGGTAATGGAGTGAATGATCAAAATGGGTTGTTTGGTACGATGGAAAGAGGATGCAGTGGTGACGGGGAAGGTAGTGGTGGTGGAGGTGGTGGTGATGAGGTGAGTTTGAAAAAGGGTCCTTGGACAACGGCTGAGGATGCAATTTTGATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTTCAAAAAAATACAGGTTTGAATCGTTGTGGGAAAAGTTGTAGGCTTAGATGGGCTAATCATTTAAAACCCAATTTGAAAAAAGGTGCATTTTCTCCTAATGAAGAGAAACTCATTGTTGAACTTCATGCTCAATTTGGGAATAAATGGGCTAGAATGGCTACTTTGTTACCTGGAAGAACGGACAATGAAATCAAGAATTACTGGAATACAAGAATTAAACGCCGTCAACGACAAGGTCTTCCTCTATATTCAGACGAACATGATCGTACCAACACACCAACAACATCAACAACACCTTCACCATGTGTGACTCCAAATGGATCAAACTCTAACAACATTACAGCAAAATTTGAGTTTATCAATCAAACCCAACACCAATATCAACAAAACCATCATCATTCTTCACCACTCCAACATAGACAACAACATCAACAACAACATTCTTATTCTCCTCACACTTTCTTAGACACTTCACCTACACCATTGTCATCTTGTTCACCACTCTCATTCACTTTCCAAAGACCCACACCACTCTTATCAACCCCGTTTCGCTTCAAACGCTACCGCTCAAATCCAAACTTCAGCCTTCAAGTCCCTAATTCAATGACACAAAATTGTACCTCTCCACACCATGATCTTTCTTTAACTTCTCATCATGATAGTAATTTCAAGTTCCCAATTCATTATAACTCAAGTTTCTCGCAATACTTTAATACTCCTTTGTTGGAATCCGACCGAGGAGTCTCTTTTTCATCGTCTTCGCCTTTCTCAACAAATTTGGAGCTACCTTCAAACCAATATTCAAGAGTATCCTCTGAACAAGATATTAAGGCAAATAATATTGAGTTCAATAATGATCCTAATGGCTTGATGGGAGATCTTTTAATGGATGCACAAACAATTGCTTGTGGACAAAATTCAAAGAAAAGAAAGTACTTGAGCTTAAATGAAGGAAATGATATGTTTAATGGTTGTCAAAGTTATGATGAATTTCCATTTAACTCTGTATATTGGTCTTCTAATTCAGGTTACTAA 1248 0.3774 MEHMNNIGNGVNDQNGLFGTMERGCSGDGEGSGGGGGGDEVSLKKGPWTTAEDAILIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWANHLKPNLKKGAFSPNEEKLIVELHAQFGNKWARMATLLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDRTNTPTTSTTPSPCVTPNGSNSNNITAKFEFINQTQHQYQQNHHHSSPLQHRQQHQQQHSYSPHTFLDTSPTPLSSCSPLSFTFQRPTPLLSTPFRFKRYRSNPNFSLQVPNSMTQNCTSPHHDLSLTSHHDSNFKFPIHYNSSFSQYFNTPLLESDRGVSFSSSSPFSTNLELPSNQYSRVSSEQDIKANNIEFNNDPNGLMGDLLMDAQTIACGQNSKKRKYLSLNEGNDMFNGCQSYDEFPFNSVYWSSNSGY* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4152 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 96 IPR017930 -
Tpr3g4152 415 SUPERFAMILY Homeodomain-like 42 139 IPR009057 -
Tpr3g4152 415 CDD SANT 47 92 IPR001005 -
Tpr3g4152 415 MobiDBLite consensus disorder prediction 194 222 - -
Tpr3g4152 415 CDD SANT 100 141 IPR001005 -
Tpr3g4152 415 MobiDBLite consensus disorder prediction 149 174 - -
Tpr3g4152 415 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Tpr3g4152 415 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 382 - -
Tpr3g4152 415 Gene3D - 44 97 - -
Tpr3g4152 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 147 IPR017930 -
Tpr3g4152 415 Gene3D - 100 146 - -
Tpr3g4152 415 SMART sant 97 145 IPR001005 -
Tpr3g4152 415 SMART sant 44 94 IPR001005 -
Tpr3g4152 415 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Tpr3g4152 415 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Tpr3g4152 415 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 382 - -
Tpr3g4152 415 ProSiteProfiles Myb-like domain profile. 40 92 IPR001005 -
Tpr3g4152 415 MobiDBLite consensus disorder prediction 156 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4152 Tpr-Chr3 46104815 46106419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4152 24 179 MYB Transcription Factor Family AT4G26930 63.354 4.55e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g4152 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4152 - - lja:Lj6g3v0869180.1 482.256