LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g4119	ATGAATCAATCGGGTAATTCAAAAATTAGCTCTGAATTTCCAATGGCTTTCCCTCCTTATCGTCCATCTCACTTCCGTAGTCAAACTTACAACACTCTTGTTTGTATTCTCACTCATCTTTCTCCTTCCACCGTTCCCACTCAACCCCTCAATCTTCCTGATAATAATGGCAATGTTGGAATGGGGCAAGAAAAGGAGCCTGAGTGCTCTGAGTTGAAAGTTGGTTCTGATGTTAAGGATCCCAAGGGTCCAGTACCCTTGGAGGATACCATTGGAAGTGTTGGAGACAAGGACAAGGATTTGAGTGCCACCGCTATGGTCCTAGATGATATACAATTTCTGATGGGAAGTGAGGAACCATCTACACAAACAAATGATTTTCAATGCGAGCAGAAATTAATGGACGAGTTGGAGCTGGTTATGAAAGGGATTGAAGATCCTGTTTGTGATAACTGTTTAATCCCCTTGAACTGTGAGAAACAAAATAGTGGTAGTGAAGTTGATTTGATGGATTACCAAGTAGAAGAACATGTTGAATTTCTGCAGTCTGGAACAAACACGTCTGAAAGTGTAAGTGAGGTGTTGACACAAGTACAAGGGGAGCATAATGAACTTGCCTCCGAAGGATTTCATGTGTTAGAGTCAACAAAGGAACACACTTCCAATTCCGTAATTAGTACATCAAGAATAGAGAATGATAGTCAACAGAAGGAAACAGAATTGGTGAATCCGGCTTCTCCTGTAGCGGTCTCACTTCCTACTATACAAGAGGATGAATTTGAGAAGGAAGAACAGGATGGTCATAAGGTTGTTGAAGAAACTCATAGTTCTTTAGATCTTGATACAAATATTGAAGCATTGAATATGGCAGAAGATGGTGGATTACTAGATTCATCAATTATGAAAGATAAATTCGAAACAGAAAATGAAGAGAAATCAGATAAGTTAATTTGTGTCAGAAATACAACAAATTCTTCTGATATTCTGATTGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGATATTTTGCAATGGATGAAAACACTTTTGATGTGTCTTCTGCGGATGATATTGTTTCAGAACAGATGAAAGTGGATGAAATTCAGAAAGCCGGGAATTCATTTGGAAACACGATACCTCCTTTAAATATGGGTCTCTCCTTTCAAGGTTTTCCATCTAATCTTTTAACGGTAAATGCAATTCAAGATTCCAATAGCAATGGACAAGTGCAACCTAGGACTATCAATGCCATACCAACAAATTTAACCCAAAATCAAGTCTTGCACAAAGGATTCATGGAAGAAACTGCTATCAAATATCACAAGAACTCGTCTGCAGCAGCACAGCAGATGGCTGATGCCAGCAGAAAGGAACAAAGTAGTCCTGGCCCTAAGAAGAAGAAAAACAAAAAGGAAGTGCTCGATGCCAGTAGAAAACGAAAACATGTTCCTGATTCTGAGAAGGAAGATGGAATAAAGGAAGATGAAAATAAGCAGATGGTTGATGCCAGTGGACGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAAGAAGGAGAAGTATCGAAATAACAGAGCAAAAAAGAACAGAGAACTAGGTGTTAAAAAGTTGAAGTTCATTCCAGTACAAAAACAAAAAATTGTTACATTTTGTCGCCATTATATGCAAGGAAGGTGCAACGAGGGTGACAAATGCAATTTCTCACATGATACTGTTCCTTCAACAAAGTCCAAGCCATGTTTTCACTTTGCTCGCCACTCTTGTATGAAAGGAGATGATTGCCCATATGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGCAATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGATATGCCTACGCCTACAAATGCTTGCAAACCAGAGTTGAAGTCTCCTCTTTCGTTGGGAAATACAAATTTCAGTACGCCACTTAATAATCATGGCAATAGTTCTGTCCAGCGAAACCACTTCACCAATTCTAAGGGAATTTATTCTCACACCAATGTAGAACATAAGGTGACAGACACTTCGCAGACAAAGCCAACCTCAGTACCCAAAGGAATTAGATTCATAAATGTTGCCAACATATCACCTAGTACGCCAAAACAAGACACGGTAACACCAAACAAGGGAAGTGTTGGCAGCACTGGGACGTGTGCAGATAAAGGTCAAAATACTGTGGAAGTTCCTAAGAAATTTCCAGCTGCCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAAAAGTTCTGTTTGCAGTTTTAAAAGTTCTATTCAATCCACTACAGAAGGAAAGATATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTGTCTGAACATTCAATTTCATCTCTGAATAAGGAATATTATGGAAAAGCCAGTGACAGAACTGCAGAAAGTTTACCACAAACTGCGCTATTCTCACATGACATTTTAGACAAAAATCAATCCATGGCAGACCGAATGAAATCAAAGTTTCTAAGGAAAGATTCAACCGATGATTCTGTGAGGGATCACGGCCATTGTAAATCAGTTCTAGAAGGAAAAAAAGCATCCGATAATTCTCAGACTTCAACTGTGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGTCTTCAGATGGTGTACTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTGTCGACTTTAGCTTTTGCAGCAGAGCATGAATCAGGTATTAAGATGAAGTGCCCTACTGGTGTTTCACCTGTATAA	2811	0.3959	MNQSGNSKISSEFPMAFPPYRPSHFRSQTYNTLVCILTHLSPSTVPTQPLNLPDNNGNVGMGQEKEPECSELKVGSDVKDPKGPVPLEDTIGSVGDKDKDLSATAMVLDDIQFLMGSEEPSTQTNDFQCEQKLMDELELVMKGIEDPVCDNCLIPLNCEKQNSGSEVDLMDYQVEEHVEFLQSGTNTSESVSEVLTQVQGEHNELASEGFHVLESTKEHTSNSVISTSRIENDSQQKETELVNPASPVAVSLPTIQEDEFEKEEQDGHKVVEETHSSLDLDTNIEALNMAEDGGLLDSSIMKDKFETENEEKSDKLICVRNTTNSSDILIEGDLEEGEISGYFAMDENTFDVSSADDIVSEQMKVDEIQKAGNSFGNTIPPLNMGLSFQGFPSNLLTVNAIQDSNSNGQVQPRTINAIPTNLTQNQVLHKGFMEETAIKYHKNSSAAAQQMADASRKEQSSPGPKKKKNKKEVLDASRKRKHVPDSEKEDGIKEDENKQMVDASGRKRGPGSQEKKTRKKEKYRNNRAKKNRELGVKKLKFIPVQKQKIVTFCRHYMQGRCNEGDKCNFSHDTVPSTKSKPCFHFARHSCMKGDDCPYDHQLSKYPCSNFVSKGSCSRGNACMFSHKVPTNQDMPTPTNACKPELKSPLSLGNTNFSTPLNNHGNSSVQRNHFTNSKGIYSHTNVEHKVTDTSQTKPTSVPKGIRFINVANISPSTPKQDTVTPNKGSVGSTGTCADKGQNTVEVPKKFPAATPKGINFLSFGKSSVCSFKSSIQSTTEGKILKLPQSVNFGLSEHSISSLNKEYYGKASDRTAESLPQTALFSHDILDKNQSMADRMKSKFLRKDSTDDSVRDHGHCKSVLEGKKASDNSQTSTVTSATLLARPFASQQSSDGVLSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGVSPV*	937

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g4119	936	MobiDBLite	consensus disorder prediction	443	531	-	-
	Tpr3g4119	936	ProSiteProfiles	Zinc finger C3H1-type profile.	547	574	IPR000571	GO:0046872
	Tpr3g4119	936	Gene3D	-	543	604	-	-
	Tpr3g4119	936	MobiDBLite	consensus disorder prediction	443	457	-	-
	Tpr3g4119	936	SUPERFAMILY	CCCH zinc finger	605	634	IPR036855	GO:0046872
	Tpr3g4119	936	SUPERFAMILY	CCCH zinc finger	548	572	IPR036855	GO:0046872
	Tpr3g4119	936	Pfam	CCCH-type zinc finger	553	572	IPR041367	-
	Tpr3g4119	936	PANTHER	PROTEIN SUPPRESSOR OF SABLE	216	932	-	-
	Tpr3g4119	936	Coils	Coil	513	533	-	-
	Tpr3g4119	936	ProSiteProfiles	Zinc finger C3H1-type profile.	576	603	IPR000571	GO:0046872
	Tpr3g4119	936	SMART	c3hfinal6	576	602	IPR000571	GO:0046872
	Tpr3g4119	936	SMART	c3hfinal6	604	628	IPR000571	GO:0046872
	Tpr3g4119	936	SMART	c3hfinal6	547	573	IPR000571	GO:0046872
	Tpr3g4119	936	MobiDBLite	consensus disorder prediction	216	242	-	-
	Tpr3g4119	936	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI	216	932	IPR045124	GO:0003723\|GO:0045892
	Tpr3g4119	936	MobiDBLite	consensus disorder prediction	459	519	-	-
	Tpr3g4119	936	ProSiteProfiles	Zinc finger C3H1-type profile.	606	629	IPR000571	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g4119	Tpr-Chr3	45696365	45717928	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Tpr3g4119		zf-CCCH_4	1.5e-07	CL0537

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g4119	-		-	cam:101495956	1131.7