Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4114 ATGGGTCGTGGAGGTGGCACAGCCGCCGCAGCGGCGGCGGCGGCAGCAGCGGCTGAACCGGGTTTTTTCAAAGAGCCAAGATACAGAGGCGTGAGAAAAAGACCGTGGGGACGGTTCGCCGCCGAGATCAGAGATCCTTTGAAAAAAGCAAGAGTTTGGCTCGGAACATTTGACACGGCTGAAGAGGCGGCGCGTGCCTACGACACCGCCGCTAGAAATCTCCGGGGACCAAAAGCCAAGACAAATTTTCCTCTTGCACAGCCTTTTTACCATAATATGGATGCCGGAGACCCGTTTTCCGATCAACGTTTCTACGCCGGTGCCGGAGTTGTCGCCGGCGATGGGTTTCAGGATCATCGGAGACCTACATCAAGTGGGATGAGTAGCACCGTTGAATCCTTCAGCGGTCCACGTCCGATCGGATTACCGGCACCGCCGTCGATCGTCGCCGGAAGAAGGTACCCACGTACACCGCCGGTTGCACCAGAGGATTGCCGTAGTGACTGTGATTCATCGTCGTCGGTTGTTGACGACGGTGACGGCGATAACGTGGCTTCATCGACGATGCTTTCATTTAAACGCCAACCACTGCCGTTTGATCTGAACGCGCCGCCGTTGGATGATGCTGACGTGGCAAATTATGGTGGTGAAGATCTGCACTGCACCCTTCTCTGCCTCTGA 681 0.5624 MGRGGGTAAAAAAAAAAAEPGFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLAQPFYHNMDAGDPFSDQRFYAGAGVVAGDGFQDHRRPTSSGMSSTVESFSGPRPIGLPAPPSIVAGRRYPRTPPVAPEDCRSDCDSSSSVVDDGDGDNVASSTMLSFKRQPLPFDLNAPPLDDADVANYGGEDLHCTLLCL* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4114 226 Gene3D AP2/ERF domain 27 86 IPR036955 GO:0003700|GO:0006355
Tpr3g4114 226 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 MobiDBLite consensus disorder prediction 167 181 - -
Tpr3g4114 226 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 PANTHER ETHYLENE RESPONSE FACTOR 1 200 - -
Tpr3g4114 226 MobiDBLite consensus disorder prediction 159 181 - -
Tpr3g4114 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 200 - -
Tpr3g4114 226 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Tpr3g4114 226 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4114 Tpr-Chr3 45664424 45665792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4114 1 226 AP2-EREBP Transcription Factor Family AT3G20310 53.414 1.18e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g4114 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4114 K09286 - gmx:100782025 296.204