Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4113 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTCGAACTTCAATTGAATGAACAAAAAGACTCTCTTTCTGCAATCGATCATGCTCTTCTCATTGATCCAACCAATTCCGAACTCCGAGAGGTTCATGAGGAGCTTGTTCAGGCTATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAGCGTTCAAGATTATTATCTGAAGCAGACACATTGCTGCCTAGTACTAATATTTTTGCTGAACAAGAAGAGAAAGTGGAGCCAATTGATCCTGCAGATGTTGAACCAGAGCCGCTACAGGAAAAATGCTATTCTGTTGGATCTATATGTAGATTCCGTTACAAAGATGGGCGTTGGTACAATGGTAAAGTGCTGCAATCGGATAATTCAGTGGCAACAATTTCATTTCTAACTCCTACATCTGAGAATATGATGATTTGCAAGTTCTTTTTACAACAGCGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAATTGATGTTCCACTATCCTCCCTTAAGGAATATGTCCCAACAATCTGGAAACCATCCCTTGCAGGGTCAAGCATATGGGCAGTCTCAAATGCAAATCCAGGGATTTGGAGAGAAGCTGAGCTTGAGTCATGGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACGATGGAAGTTCTGTGAAGCTTGGTGCACAAGATATGGTATTATCTGAGTATGCAGATGTGAGTGACATAGATAGTGATTCCAGCTTAGAACAATCCGATTACAGCGGCTCAGAGGAAGAGGAACCACAGGGTTTAGGATTTATGGATAGTACCAACTTACAGAAAGGTGTTCAAACCGAAACTGCAATATTTGCGACGTGGGAGAACCATACCAGAGGAATGGCTTCCAAAATGATGGCTAATATGGGTTACCAAGAAGGAACGGGTTTAGGTTTAACTGGACAGGGCATGCTTAATCCCATACCGGTGAAGGTCCTACCACCAGGACAGTCCTTAGATCATGCGCTTAAGTCTCATAAAGTGAAAGAGAACACCCAGACGAAAAGAAAGAAACGTACCCGAGGTGGTCGGAGAAAACGCGAGAAGAAATTTGCTGAAGCAATTCGTGCCGCAAAAGAAGAAGAAGAATCGCCACCAGATGTCTTCTCACTAATAAACACTCAACTAGCAATGCACGGTGAAGCTTCCAATGAAGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCAGCAGAAGTTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTATGAGAATGATGTGAAGGATCTGAAAATTCAGGTTCTAAAGTTTGAACAAATGGCGGAAGCAAACAAGAGAGAAAAACCTGTTTACGACGCTGCTATGAAAAAATTAGTCCAAACCCGCAAGGCTTTGGCTGAGGCTGAAGCAGTTCACGCTTCTGCCTCAGATGATGTTGTTAGCAAAGAGAAAGAAAAGAGATGGCTTAAGTTTTAG 1488 0.4274 MGSEEERVLENQLELQLNEQKDSLSAIDHALLIDPTNSELREVHEELVQAIKDAEEGLLHLKRSRLLSEADTLLPSTNIFAEQEEKVEPIDPADVEPEPLQEKCYSVGSICRFRYKDGRWYNGKVLQSDNSVATISFLTPTSENMMICKFFLQQRCRFGSNCRLSHGIDVPLSSLKEYVPTIWKPSLAGSSIWAVSNANPGIWREAELESWDEKAGVGQVVFRDDGSSVKLGAQDMVLSEYADVSDIDSDSSLEQSDYSGSEEEEPQGLGFMDSTNLQKGVQTETAIFATWENHTRGMASKMMANMGYQEGTGLGLTGQGMLNPIPVKVLPPGQSLDHALKSHKVKENTQTKRKKRTRGGRRKREKKFAEAIRAAKEEEESPPDVFSLINTQLAMHGEASNEGSMKKQQSKGSAEVKKVDRKVLVAYENDVKDLKIQVLKFEQMAEANKREKPVYDAAMKKLVQTRKALAEAEAVHASASDDVVSKEKEKRWLKF* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4113 495 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
Tpr3g4113 495 Coils Coil 455 475 - -
Tpr3g4113 495 MobiDBLite consensus disorder prediction 339 383 - -
Tpr3g4113 495 Coils Coil 37 57 - -
Tpr3g4113 495 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Tpr3g4113 495 Pfam G-patch domain 295 337 IPR000467 GO:0003676
Tpr3g4113 495 MobiDBLite consensus disorder prediction 246 274 - -
Tpr3g4113 495 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Tpr3g4113 495 Pfam CCCH-type zinc finger 147 167 IPR041367 -
Tpr3g4113 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Tpr3g4113 495 MobiDBLite consensus disorder prediction 364 383 - -
Tpr3g4113 495 MobiDBLite consensus disorder prediction 347 363 - -
Tpr3g4113 495 SMART G-patch_5 293 339 IPR000467 GO:0003676
Tpr3g4113 495 Coils Coil 424 444 - -
Tpr3g4113 495 Gene3D - 102 179 - -
Tpr3g4113 495 SMART c3hfinal6 142 168 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4113 Tpr-Chr3 45651027 45656750 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g4113 G-patch 6.6e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4113 - - gmx:100796284 677.167