Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4103 ATGGCTTTTTCCACTGACATCCATCACCTTCCCGACCGATTCCCGGAGGGTTTAAGAGTCTTTATCATTGATCATGACACCACTCAACTTAATGCCATTGCGGATTTGTGCTTTCAATGCAACTATGAAGTTACCACATGCGTTGCGGCTTCTTTTGCCGTGCATCTTTTGAGAGAAACAAAGGGTTCTTTTGATGTGATAGTAATTGAAGCTCAAATGCCGGACATGGATTCGTACGAATTTTTGCAACGTGTTACACAAGAAATCAAAATTCCAATCATAATGATGGGAGTTGATGACACAACAAATGCAAGAATGAAGTCCATTGAAAAAGGGGCATGTGAATATTGGGTTAAACCTTTGAATGTGAATCATATCAACAACATGTGGCAACATGTTGTAACGATTCAAGACCAAGATCAAATTTGTAGAATATTGGAGGTAAAAACAGGACTAAAAATAATGAAGAGAAATCATGAAACTGCAACAAAAGAAACCAATGCTTATGTTCTTGAAAAATATAGTGATAATGATCATGATCAACCTCCAACAAAGAAGAATCGTTTATCATGGTCAGACCCAAAACTTAAAGAACAATTTCTAAAAGTTGTGAATCAACTTGGCATAGATAAGGCAACGCCAAAACATATTACTAAATTGATGAATGTTCGGGGTTTGACACAAAGCCAGGTTGCTAGCCATTTGCAGAAAGTGAGACTTGGTTTGAAGGGTAAAAGTAAAAAGACAAAGTTAAAGAAGGAATTGTCAAAAAGTGGAAAGCATAATCAATATCATGTTCCTAATAATGAAAGCCTTGAAGTTGTTCAATCAATGCCAATGCCAATGCCTGAACAAAATGAAAGTGTTGAAGTTGTTCAGTCAATGCCAATGCCAGAACAGAATGAAAGTGTTGAAGTTGTTCAGTCAATGCCTGCTGCAGAACAGGACCAAAATGTTGTACCGAATTCAGCAAACATACAATGTGATTACAACATTCCTGCACAAGCACAACAGCATGAGAATGTGTTTGATGATTTTGATATTTCCAAATTGTTTACTAACGAAACCAACATGATGGTAGATGGTTCATCATACCTATATGATGAAGCATGGCATTCATCTGAATATGGCACATTTGATTGGTGTTAG 1149 0.3681 MAFSTDIHHLPDRFPEGLRVFIIDHDTTQLNAIADLCFQCNYEVTTCVAASFAVHLLRETKGSFDVIVIEAQMPDMDSYEFLQRVTQEIKIPIIMMGVDDTTNARMKSIEKGACEYWVKPLNVNHINNMWQHVVTIQDQDQICRILEVKTGLKIMKRNHETATKETNAYVLEKYSDNDHDQPPTKKNRLSWSDPKLKEQFLKVVNQLGIDKATPKHITKLMNVRGLTQSQVASHLQKVRLGLKGKSKKTKLKKELSKSGKHNQYHVPNNESLEVVQSMPMPMPEQNESVEVVQSMPMPEQNESVEVVQSMPAAEQDQNVVPNSANIQCDYNIPAQAQQHENVFDDFDISKLFTNETNMMVDGSSYLYDEAWHSSEYGTFDWC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4103 382 Gene3D - 183 244 - -
Tpr3g4103 382 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Tpr3g4103 382 SUPERFAMILY CheY-like 16 136 IPR011006 -
Tpr3g4103 382 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Tpr3g4103 382 CDD REC_typeB_ARR-like 20 134 - -
Tpr3g4103 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 339 IPR045279 GO:0009736
Tpr3g4103 382 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 186 240 IPR006447 GO:0003677
Tpr3g4103 382 Gene3D - 14 140 - -
Tpr3g4103 382 SMART REC_2 18 130 IPR001789 GO:0000160
Tpr3g4103 382 SUPERFAMILY Homeodomain-like 184 243 IPR009057 -
Tpr3g4103 382 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 15 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4103 Tpr-Chr3 45544807 45546156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4103 12 243 Response Regulator Gene Family AT4G31920 37.931 2.07e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr3g4103 Response_reg 3e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4103 - K14491 mtr:MTR_6g045327 233.802