Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4102 ATGCATCCTAACTTAGTGGCACCAGTGGTGTCCTCCCCAACTAATCTCCTGCAAGTGCCGGGTTCCAAACTCCGTCTCTTGTGCAGCTACGGAGGCCACATCGTGCCACGTGACAACTCCCTTTACTATGTAGGCGGAGACACTCGCATTGTGGCCGTGGACCGCCACTCATCCTTAACACACCTTTGTTTTCACCTCTCCCGCAATCTCCTTCATGGAAGAAGATCATTCACTCTTAAGTACCATCTTCCCGATGAAGACCTTGACAATCTCATCACTGTTTCCACCGATGAAGACCTCCAAAACATGATCGAAGAGTATGATCGTTTGTCTTCAAACCCTTACCCCTCCCCTTCTCGACTCAGATTGTTCCTCTTTTTCTCCAAACCAGAAACTGCTGTTTCCATGGACACTCTCCACTATGACGACTCTAATCATTCGTGGTTCGTGGAAGCTCTCAACAACTCAGGGATTCTCTCTCGGGTTGTTTCTGATTCTGCTGCTGTTGTTGATAATTGCCTCCTCAACATTGATGATTATGATGCAAGTGCTTCTAGCTGCAACGACGAAAATACTAATAATAATGTCAACAAGGAGCATTTAATTGATGTGGATTATTCCGCACCTGTGGACGAGGAGGACAACATGTTTAATTATTCATTTGATAATCTTCCTCAAATACGAGTTCGCATTGATGAACAGAAGCTTGTTGATATGGAGCAGCAGCAACAGCAGGAGGATAACAACTTTGACGATGTAAAAATGGCGAATGTGAAGCAAGATGATGCTTTTCATGTGCACTCACAGGTCAAAAGTGATCAAAATCAGCAAGGGGAACAAGTAAACAATTCTACTTACACTTCAGCCCAACAACCGGATCAAAATCCGCAACAACCCGCCACATATCAAAATCAATTTGTCTATATTCACCGTCCTATAGGTACAGGTCAAGTGCCAATATCATCATACTACCCTTATTATGCACCACAATCACACCAACAACTTAATCAGTTCCCAATTTATGTGATGCCTATTGGACTTGGATCTACACAACCATACAACATGGCTTTGCAACCTAATATAGCTGACACAAATGTAGTAGCCTCAGTTAGGCCACAAATACCACAAAGTGTTGTATCTGAAGTGACTCCAAGTGTTTATAAAGCTCCTGTTGCATCAAATTCTGGTTTTATTCAAATACCTTCCAACCAATTTCAGCAGCAATATGTGAATTTGCCTCAAAATATTCACCATCCACCACACCCTATTTATGGTTATGACTATGGTGGAGCTATGCAAGAACAAGTATACTATACACAAACACAGCAACAGCATGCAAATGCAAATGCACCGTCTCTGTACCAATCCATGACCCCGGCGGTTGCTGGAGCAGCAATATCAGATGTTTCAAAACAATTTCCTACAGATAAAATTCAGCAGCCAAACAAAAACTCACAACAAGTATGA 1467 0.426 MHPNLVAPVVSSPTNLLQVPGSKLRLLCSYGGHIVPRDNSLYYVGGDTRIVAVDRHSSLTHLCFHLSRNLLHGRRSFTLKYHLPDEDLDNLITVSTDEDLQNMIEEYDRLSSNPYPSPSRLRLFLFFSKPETAVSMDTLHYDDSNHSWFVEALNNSGILSRVVSDSAAVVDNCLLNIDDYDASASSCNDENTNNNVNKEHLIDVDYSAPVDEEDNMFNYSFDNLPQIRVRIDEQKLVDMEQQQQQEDNNFDDVKMANVKQDDAFHVHSQVKSDQNQQGEQVNNSTYTSAQQPDQNPQQPATYQNQFVYIHRPIGTGQVPISSYYPYYAPQSHQQLNQFPIYVMPIGLGSTQPYNMALQPNIADTNVVASVRPQIPQSVVSEVTPSVYKAPVASNSGFIQIPSNQFQQQYVNLPQNIHHPPHPIYGYDYGGAMQEQVYYTQTQQQHANANAPSLYQSMTPAVAGAAISDVSKQFPTDKIQQPNKNSQQV* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4102 488 MobiDBLite consensus disorder prediction 267 299 - -
Tpr3g4102 488 Coils Coil 483 488 - -
Tpr3g4102 488 Pfam PB1 domain 37 126 IPR000270 GO:0005515
Tpr3g4102 488 Gene3D - 42 127 - -
Tpr3g4102 488 CDD PB1_UP2 27 126 - -
Tpr3g4102 488 PANTHER OS05G0427100 PROTEIN-RELATED 17 236 - -
Tpr3g4102 488 PANTHER OS05G0427100 PROTEIN-RELATED 249 481 - -
Tpr3g4102 488 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 17 236 - -
Tpr3g4102 488 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 249 481 - -
Tpr3g4102 488 SUPERFAMILY CAD & PB1 domains 38 136 - -
Tpr3g4102 488 SMART PB1_new 36 126 IPR000270 GO:0005515
Tpr3g4102 488 MobiDBLite consensus disorder prediction 269 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4102 Tpr-Chr3 45542595 45544061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4102 23 155 MAP Kinase Kinase Kinase AT5G57610 45.255 1.13e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4102 - - mtr:MTR_8g106245 573.548