Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g4070 ATGGAATCACTTCCTATAACCGTTTACGCTGTGTTTAAGAAATGGGGATACTTTTTTGCCACCAGAGCTGTGCTTGGATTGCATCCACGGCTACAAGGTATTGATTGGACATGTTTTTCTGTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCCGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTTTGGAGGATATTGATAAATTTATCAGGGAAAATCATTTTGATGAATGTGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGCGGGCATAAATGTGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTTTGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCCTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATTGAAGGCTATCATCAGGAATGCGGACGAGCTGGTAGAGATGGTCAGAGTTCCTCCTGTGTCTTGTATTATAGCTACAGTGACTATATCCGAGTTAAGCATATGTTAAGCCTAGGAGCAATAGAGCAAAGCCCAATGCCATCTGGATACAGTCGTTCAAATGCGATAAATTCAGGAAGGATACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTGGACTGTCGGCGCTATATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCATATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACATGAGACTGTGCGTCTTCACGGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCCCGTATATTGCAACATCTTGTTGTTGAGGATTTTCTTGTGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCCGTATCATCTGTATTGAAGGTAAATGAGACAAAGGTCCGTAATGTGTTATTTGGTAGCCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCTGGGAAATCTGATATAACTCCAGCCAAAGGTTCTCTGACTTCCGGAAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTCAAACTGAAGTAGACGTGAACCTAGCAGCTAATTTGTACACTGCTCTGAGGATGTTGCGGACAGCTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTTACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAGACTACCAAGAACAAAAGAAGAACTTCTTTATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACAATTGAGAAAACCATAAACGAATTTTACAATACGGATAAAAACAGCAGTGGCAGCAAAGGCAGTGCTGATTCAGCCAAAAGAAGACGAGAGGCAAATAGAGATCCAGATTCAAATGCGGAGGATGATGATGATTCCTTAATCAAAAGTACCGGTCGTTCCAAGAAAAGGACAGTAAGGAGACAAATTAAAAAGGCTGAAATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTTGATGAGGACCTAGATTGTATTAATATTGAAGATGAGGCATTAGATAAAATAAATGGTACAGATGCTGCAGGAAGAGTACTACCTCGATGGACAGCATCTTGA 2097 0.4111 MESLPITVYAVFKKWGYFFATRAVLGLHPRLQGIDWTCFSVLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAFVQRQWSKDEINIICATLAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQSSSCVLYYSYSDYIRVKHMLSLGAIEQSPMPSGYSRSNAINSGRILETNTENLLRMVSYCENDVDCRRYIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILQHLVVEDFLVEEVKKSDFYGSVSSVLKVNETKVRNVLFGSQRIILRFPSSVKASKPGKSDITPAKGSLTSGKLNLPIDIPDQPQTEVDVNLAANLYTALRMLRTALCREAGEGVMAYHIFGNATLQQISKRLPRTKEELLYINGISKTKVSKYGDRLLETIEKTINEFYNTDKNSSGSKGSADSAKRRREANRDPDSNAEDDDDSLIKSTGRSKKRTVRRQIKKAEIYDSEEEDYYHGCLDEDLDCINIEDEALDKINGTDAAGRVLPRWTAS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g4070 698 Pfam RQC domain 360 476 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tpr3g4070 698 Pfam Helicase conserved C-terminal domain 154 260 IPR001650 -
Tpr3g4070 698 MobiDBLite consensus disorder prediction 597 644 - -
Tpr3g4070 698 SMART hrdc7 514 596 IPR002121 GO:0003676
Tpr3g4070 698 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 39 414 IPR004589 GO:0004386|GO:0006310
Tpr3g4070 698 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 130 IPR014001 -
Tpr3g4070 698 Pfam HRDC domain 519 586 IPR002121 GO:0003676
Tpr3g4070 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 404 IPR027417 -
Tpr3g4070 698 CDD SF2_C_RecQ 138 270 - -
Tpr3g4070 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 132 IPR027417 -
Tpr3g4070 698 SMART RQC_2 363 474 IPR018982 GO:0006260|GO:0006281|GO:0043138
Tpr3g4070 698 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 69 78 IPR002464 -
Tpr3g4070 698 Gene3D - 138 357 IPR027417 -
Tpr3g4070 698 ProSiteProfiles Rhodanese domain profile. 170 212 IPR001763 -
Tpr3g4070 698 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 300 IPR001650 -
Tpr3g4070 698 Gene3D HRDC domain 513 602 IPR044876 -
Tpr3g4070 698 Pfam RecQ zinc-binding 272 353 IPR032284 -
Tpr3g4070 698 Gene3D - 31 137 IPR027417 -
Tpr3g4070 698 ProSiteProfiles HRDC domain profile. 514 596 IPR002121 GO:0003676
Tpr3g4070 698 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 36 666 - -
Tpr3g4070 698 Gene3D - 361 471 IPR036388 -
Tpr3g4070 698 PANTHER DNA HELICASE RECQ FAMILY MEMBER 36 666 - -
Tpr3g4070 698 MobiDBLite consensus disorder prediction 607 636 - -
Tpr3g4070 698 SMART helicmild6 180 261 IPR001650 -
Tpr3g4070 698 SUPERFAMILY HRDC-like 518 590 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g4070 Tpr-Chr3 45278752 45283908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g4070 170 274 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 9.25e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g4070 K10901 - gmx:100800006 1068.14